Designing Filters for Fast-Known NcRNA Identification. - Yanni Sun; Jeremy Buhler; Cheng Yuan 001 (IEEE ACM Trans. Comput. Biol. Bioinform., 2012)

Efficient known ncRNA search including pseudoknots. - Cheng Yuan 001; Yanni Sun (BMC Bioinform., 2013)

Reconstructing 16S rRNA genes in metagenomic data. - Cheng Yuan 001; Jikai Lei; James R. Cole; Yanni Sun (Bioinform., 2015)