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VariantBam: filtering and profiling of next-generational sequencing data using region-specific rules. - Jeremiah A. Wala; Cheng-Zhong Zhang; Matthew Meyerson; Rameen Beroukhim (Bioinform., 2016)

Analyses of non-coding somatic drivers in 2,658 cancer whole genomes. - Esther Rheinbay; Morten Muhlig Nielsen; Federico Abascal; Jeremiah Wala; Ofer Shapira; Grace Tiao; Henrik Hornshøj; Julian M. Hess; Randi Istrup Juul; Ziao Lin; Lars Feuerbach; Radhakrishnan Sabarinathan; et al. (Nat., 2020)