Functional Basis of Microorganism Classification. - Chengsheng Zhu; Tom O. Delmont; Timothy M. Vogel; Yana Bromberg (PLoS Comput. Biol., 2015)

clubber: removing the bioinformatics bottleneck in big data analyses. - Maximilian Miller; Chengsheng Zhu; Yana Bromberg (J. Integr. Bioinform., 2017)

fusionDB: assessing microbial diversity and environmental preferences via functional similarity networks. - Chengsheng Zhu; Yannick Mahlich; Maximilian Miller; Yana Bromberg (Nucleic Acids Res., 2018)