GVFOM: a novel external force for active contour based image segmentation. - Ziyang Zhang; Chenrui Duan; Tao Lin; Shoujun Zhou; Yuanquan Wang 001; Xuedong Gao (Inf. Sci., 2020)

Video Captioning in Compressed Video. - Mingjian Zhu; Chenrui Duan; Changbin Yu (CoRR, 2021)

MuST: Maximizing the Latent Capacity of Spatial Transcriptomics Data with Multi-modality Structure Transformation. - Zelin Zang; Liangyu Li; Yongjie Xu; Jiahao Li; Chenrui Duan; Yi Sun; Zhen Lei 001; Stan Z. Li (BIBM, 2024)

PhyloGen: Language Model-Enhanced Phylogenetic Inference via Graph Structure Generation. - Chenrui Duan; Zelin Zang; Siyuan Li 002; Yongjie Xu; Stan Z. Li (NeurIPS, 2024)

FGeneBERT: function-driven pre-trained gene language model for metagenomics. - Chenrui Duan; Zelin Zang; Yongjie Xu; Hang He; Siyuan Li 002; Zihan Liu; Zhen Lei 001; Ju-Sheng Zheng; Stan Z. Li (Briefings Bioinform., 2024)

Must: Maximizing Latent Capacity of Spatial Transcriptomics Data. - Zelin Zang; Liangyu Li; Yongjie Xu; Chenrui Duan; Kai Wang 036; Yang You 001; Yi Sun; Stan Z. Li (CoRR, 2024)

FGBERT: Function-Driven Pre-trained Gene Language Model for Metagenomics. - Chenrui Duan; Zelin Zang; Yongjie Xu; Hang He; Zihan Liu; Zijia Song; Ju-Sheng Zheng; Stan Z. Li (CoRR, 2024)

A Review of Artificial Intelligence based Biological-Tree Construction: Priorities, Methods, Applications and Trends. - Zelin Zang; Yongjie Xu; Chenrui Duan; Jinlin Wu; Stan Z. Li; Zhen Lei 001 (CoRR, 2024)

A Review of BioTree Construction in the Context of Information Fusion: Priors, Methods, Applications and Trends. - Zelin Zang; Yongjie Xu; Chenrui Duan; Yue Yuan; Yue Shen; Jinlin Wu; Zhen Lei 001; Stan Z. Li (Inf. Fusion, 2025)