rCom: a route-based framework inferring cell type communication and regulatory network using single cell data. - Honglin Wang; Pujan Joshi; Chenyu Zhang 007; Peter F. Maye; David W. Rowe; Dong-Guk Shin (BCB, 2022)

Pola Viz Reveals Microglia Polarization at Single Cell Level in Alzheimer's Disease. - Chenyu Zhang 007; Pujan Joshi; Honglin Wang; Seung-Hyun Hong; Riqiang Yan; Dong-Guk Shin (BIBM, 2022)

Using Biological Processes as Prior Knowledge Identifies New Microglial Immune Signatures at Single Cell Level in Alzheimer's Disease. - Chenyu Zhang 007; Honglin Wang; Seung-Hyun Hong; Riqiang Yan; Dong-Guk Shin (BIBM, 2023)

AFA: Abstract Functional Analysis Identifies New Microglial Subtypes at Single Cell Level in Alzheimer's Disease. - Chenyu Zhang 007; Honglin Wang; Seung-Hyun Hong; Riqiang Yan; Dong-Guk Shin (ICCABS, 2023)

Leveraging Mutual Information for Functional Annotation Analysis of Microglia in Alzheimer's Disease. - Chenyu Zhang 007; Qingli Hu; Honglin Wang; Seung-Hyun Hong; Riqiang Yan; Dong-Guk Shin (BCB, 2024)

FuncNet: A Machine Learning Framework Capable of Enhancing Neural Cell Type Classification via Functional Subtype Clustering. - Chenyu Zhang 007; Honglin Wang; Seung-Hyun Hong; Riqiang Yan; Dong-Guk Shin (BIBM, 2024)