sRNAMap: genomic maps for small non-coding RNAs, their regulators and their targets in microbial genomes. - Hsi-Yuan Huang; Heng-Yi Chang; Chih-Hung Chou; Ching-Ping Tseng; Shinn-Ying Ho; Chi-Dung Yang; Yih-Wei Ju; Hsien-Da Huang (Nucleic Acids Res., 2009)

GeNOSA: inferring and experimentally supporting quantitative gene regulatory networks in prokaryotes. - Yi-Hsiung Chen; Chi-Dung Yang; Ching-Ping Tseng; Hsien-Da Huang; Shinn-Ying Ho (Bioinform., 2015)

miRTarBase 2016: updates to the experimentally validated miRNA-target interactions database. - Chih-Hung Chou; Nai-Wen Chang 001; Sirjana Shrestha; Sheng-Da Hsu; Yu-Ling Lin; Wei-Hsiang Lee; Chi-Dung Yang; Hsiao-Chin Hong; Ting-Yen Wei; Siang-Jyun Tu; Tzi-Ren Tsai; Shu-Yi Ho; et al. (Nucleic Acids Res., 2016)

Gene expression profiling of tumor-associated macrophages after exposure to single-dose irradiation. - Wei-Hsiang Kung; Ching-Fang Yu; Andy Chi-Lung Lee; Chi-Dung Yang; Yu-Chen Liu; Fang-Hsin Chen; Hsien-Da Huang (Comput. Biol. Chem., 2017)

Ouroboros resembling competitive endogenous loop (ORCEL) in circular RNAs revealed through transcriptome sequencing dataset analysis. - Yu-Chen Liu; Hsiao-Chin Hong; Chi-Dung Yang; Wei-Hsiang Lee; Hsin-Tzu Huang; Hsien-Da Huang (BMC Genom., 2018)

Integrated microRNA and mRNA expression profile analysis of tumor-associated macrophages after exposure to single-dose irradiation. - Wei-Hsiang Kung; Andy Chi-Lung Lee; Chi-Dung Yang; Ching-Fang Yu; Men-Yee Chiew; Fang-Hsin Chen; Hsien-Da Huang (Comput. Biol. Chem., 2018)

miRTarBase update 2018: a resource for experimentally validated microRNA-target interactions. - Chih-Hung Chou; Sirjana Shrestha; Chi-Dung Yang; Nai-Wen Chang 001; Yu-Ling Lin; Kuang-Wen Liao; Wei-Chih Huang 002; Ting-Hsuan Sun; Siang-Jyun Tu; Wei-Hsiang Lee; Men-Yee Chiew; Chun-San Tai; et al. (Nucleic Acids Res., 2018)