AtmiRNET: a web-based resource for reconstructing regulatory networks of Arabidopsis microRNAs. - Chia-Hung Chien; Yi-Fan Chiang-Hsieh; Yi-An Chen; Chi-Nga Chow; Nai-Yun Wu; Ping-Fu Hou; Wen-Chi Chang (Database J. Biol. Databases Curation, 2015)

EXPath: a database of comparative expression analysis inferring metabolic pathways for plants. - Chia-Hung Chien; Chi-Nga Chow; Nai-Yun Wu; Yi-Fan Chiang-Hsieh; Ping-Fu Hou; Wen-Chi Chang (BMC Genom., 2015)

PlantPAN 2.0: an update of plant promoter analysis navigator for reconstructing transcriptional regulatory networks in plants. - Chi-Nga Chow; Han-Qin Zheng; Nai-Yun Wu; Chia-Hung Chien; Hsien-Da Huang; Tzong-Yi Lee; Yi-Fan Chiang-Hsieh; Ping-Fu Hou; Tien-Yi Yang; Wen-Chi Chang (Nucleic Acids Res., 2016)

microRPM: a microRNA prediction model based only on plant small RNA sequencing data. - Kuan-Chieh Tseng; Yi-Fan Chiang-Hsieh; Hsuan Pai; Chi-Nga Chow; Shu-Chuan Lee; Han-Qin Zheng; Po-Li Kuo; Guan-Zhen Li; Yu-Cheng Hung; Na-Sheng Lin; Wen-Chi Chang (Bioinform., 2018)

Delineation of condition specific Cis- and Trans-acting elements in plant promoters under various Endo- and exogenous stimuli. - Chi-Nga Chow; Yi-Fan Chiang-Hsieh; Chia-Hung Chien; Han-Qin Zheng; Tzong-Yi Lee; Nai-Yun Wu; Kuan-Chieh Tseng; Ping-Fu Hou; Wen-Chi Chang (BMC Genom., 2018)

PlantPAN3.0: a new and updated resource for reconstructing transcriptional regulatory networks from ChIP-seq experiments in plants. - Chi-Nga Chow; Tzong-Yi Lee; Yu-Cheng Hung; Guan-Zhen Li; Kuan-Chieh Tseng; Ya-Hsin Liu; Po-Li Kuo; Han-Qin Zheng; Wen-Chi Chang (Nucleic Acids Res., 2019)