Content-Based Retrieval from Medical Image Databases: A Synergy of Human Interaction, Machine Learning and Computer Vision. - Carla E. Brodley; Avinash C. Kak; Chi-Ren Shyu; Jennifer G. Dy; Lynn S. Broderick; Alex M. Aisen (AAAI/IAAI, 1999)

The Customized-Queries Approach to CBIR Using EM. - Jennifer G. Dy; Carla E. Brodley; Avinash C. Kak; Chi-Ren Shyu; Lynn S. Broderick (CVPR, 1999)

Customized-queries approach to CBIR. - Jennifer G. Dy; Carla E. Brodley; Avinash C. Kak; Chi-Ren Shyu; Lynn S. Broderick (Storage and Retrieval for Image and Video Databases (SPIE), 1999)

Archiving and retrieval of sequential images from tomographic databases in PACS. - Chi-Ren Shyu; T. Tony Cai; Lynn S. Broderick (Storage and Retrieval for Image and Video Databases (SPIE), 1999)

ASSERT: A Physician-in-the-Loop Content-Based Retrieval System for HRCT Image Databases. - Chi-Ren Shyu; Carla E. Brodley; Avinash C. Kak; Akio Kosaka; Alex M. Aisen; Lynn S. Broderick (Comput. Vis. Image Underst., 1999)

A Web-Based CBIR-Assisted Learning Tool for Radiology Education - Anytime and Anyplace. - Chi-Ren Shyu; Avinash C. Kak; Carla E. Brodley; Christina Pavlopoulou; M. F. Chyan; Lynn S. Broderick (IEEE International Conference on Multimedia and Expo (I), 2000)

Spatial Lesion Indexing for Medical Image Databases Using Force Histograms. - Chi-Ren Shyu; Pascal Matsakis (CVPR (2), 2001)

A Hybrid Tree Approach for Efficient Image Database Retrieval with Dynamic Feedback. - Jaturon Harnsomburana; Chi-Ren Shyu (ICPR (1), 2002)

RFLPRetriever: a content-based retrieval system for biological image databases. - Chi-Ren Shyu; Seth A. Havermann; Kristopher Stice; Georgia L. Davis (Storage and Retrieval for Media Databases, 2002)

Using Human Perceptual Categories for Content-Based Retrieval from a Medical Image Database. - Chi-Ren Shyu; Christina Pavlopoulou; Avinash C. Kak; Carla E. Brodley; Lynn S. Broderick (Comput. Vis. Image Underst., 2002)

EBS k-d Tree: An Entropy Balanced Statistical k-d Tree for Image Databases with Ground-Truth Labels. - Grant J. Scott; Chi-Ren Shyu (CIVR, 2003)

Semantics modeling in diagnostic medical image databases using customized fuzzy membership functions. - Adrian S. Barb; Chi-Ren Shyu (FUZZ-IEEE, 2003)

Whither Biological Database Research? - Toni Kazic; Edward H. Coe; Mary L. Polacco; Chi-Ren Shyu (OMICS, 2003)

Semantic Integration and Knowledge Exchange for Diagnostic Medical Image Databases. - Adrian S. Barb; Chi-Ren Shyu; Yash Sethi (BIBE, 2004)

ACMES: fast multiple-genome searches for short repeat sequences with concurrent cross-species information retrieval. - Jeff Reneker; Chi-Ren Shyu; Peiyu Zeng; Joseph C. Polacco; Walter Gassmann (Nucleic Acids Res., 2004)

ProteinDBS: a real-time retrieval system for protein structure comparison. - Chi-Ren Shyu; Pin-Hao Chi; Grant J. Scott; Dong Xu 002 (Nucleic Acids Res., 2004)

Modeling Multi-object Spatial Relationships for Satellite Image Database Indexing and Retrieval. - Grant J. Scott; Matt Klaric; Chi-Ren Shyu (CIVR, 2005)

Automated object extraction through simplification of the differential morphological profile for high-resolution satellite imagery. - Matthew N. Klaric; Grant J. Scott; Chi-Ren Shyu; Curt H. Davis (IGARSS, 2005)

Mining image content associations for visual semantic modeling in geospatial information indexing and retrieval. - Chi-Ren Shyu; Adrian S. Barb; Curt H. Davis (IGARSS, 2005)

Refined repetitive sequence searches utilizing a fast hash function and cross species information retrievals. - Jeff Reneker; Chi-Ren Shyu (BMC Bioinform., 2005)

A Fast Protein Structure Retrieval System Using Image-Based Distance Matrices and Multidimensional Index. - Pin-Hao Chi; Grant J. Scott; Chi-Ren Shyu (Int. J. Softw. Eng. Knowl. Eng., 2005)

Knowledge representation and sharing using visual semantic modeling for diagnostic medical image databases. - Adrian S. Barb; Chi-Ren Shyu; Yash Sethi (IEEE Trans. Inf. Technol. Biomed., 2005)

Representing Clinical Questions by Semantic Type for Better Classification. - Tetsuya Kobayashi; Chi-Ren Shyu (AMIA, 2006)

Knowledge Discovery using Domain-Concept Mining Approach for the Behavioral Risk Factor Surveillance System (BRFSS) Data. - Wannapa Kay Mahamaneerat; Chi-Ren Shyu (AMIA, 2006)

Applying Sequential Forward Floating Selection to Protein Structure Prediction with a Study of HIV-1 RP. - Jeff Reneker; Chi-Ren Shyu (AMIA, 2006)

Predicting Cancer Interaction Networks Using Text-Mining and Structure Understanding. - Christopher M. Topinka; Chi-Ren Shyu (AMIA, 2006)

Predicting Ranked SCOP Domains by Mining Associations of Visual Contents in Distance Matrices. - Pin-Hao Chi; Chi-Ren Shyu (APBC, 2006)

Fusion of Spectral and Spatial Information for Automated Change Detection in High Resolution Satellite Imagery. - Brian C. Claywell; Curt H. Davis; Chi-Ren Shyu (IGARSS, 2006)

Mining Visual Associations from User Feedback for Weighting Multiple Indexes in Geospatial Image Retrieval. - Matthew N. Klaric; Grant J. Scott; Chi-Ren Shyu (IGARSS, 2006)

A Framework for Geospatial Satellite Imagery Retrieval Systems. - Matthew Klaric; Grant J. Scott; Chi-Ren Shyu; Curt H. Davis; Kannappan Palaniappan (IGARSS, 2006)

Knowledge Discovery by Mining Association Rules and Temporal-Spatial Information from Large-Scale Geospatial Image Databases. - Chi-Ren Shyu; Matthew N. Klaric; Grant J. Scott; Wannapa Kay Mahamaneerat (IGARSS, 2006)

A fast SCOP fold classification system using content-based E-Predict algorithm. - Pin-Hao Chi; Chi-Ren Shyu; Dong Xu 002 (BMC Bioinform., 2006)

User-specific semantics for modeling content-based geospatial knowledge. - Adrian S. Barb; Chi-Ren Shyu (IGARSS, 2007)

Searching and Mining Visually Observed Phenotypes of maize Mutants. - Chi-Ren Shyu; Jaturon Harnsomburana; Jason M. Green; Adrian S. Barb; Toni Kazic; Mary L. Schaeffer; Edward H. Coe (J. Bioinform. Comput. Biol., 2007)

Image Analysis for Mapping Immeasurable Phenotypes in Maize [Life Sciences]. - Chi-Ren Shyu; Jason M. Green; Daniel Pak-Kong Lun; Toni Kazic; Mary L. Schaeffer; Ed Coe (IEEE Signal Process. Mag., 2007)

GeoIRIS: Geospatial Information Retrieval and Indexing System - Content Mining, Semantics Modeling, and Complex Queries. - Chi-Ren Shyu; Matthew N. Klaric; Grant J. Scott; Adrian S. Barb; Curt H. Davis; Kannappan Palaniappan (IEEE Trans. Geosci. Remote. Sens., 2007)

Knowledge-Driven Multidimensional Indexing Structure for Biomedical Media Database Retrieval. - Grant J. Scott; Chi-Ren Shyu (IEEE Trans. Inf. Technol. Biomed., 2007)

Ontology Driven Content Mining and Semantic Queries for Satellite Image Databases. - Adrian S. Barb; Chi-Ren Shyu (IGARSS (3), 2008)

GeoCDX: An Automated Change Detection & Exploitation System for High Resolution Satelite Imagery. - Ozy Sjahputera; Curt H. Davis; Brian C. Claywell; Nicholas J. Hudson 002; James M. Keller; Michael G. Vincent; Yonghong Li; Matthew N. Klaric; Chi-Ren Shyu (IGARSS (5), 2008)

The effects of conceptual description and search practice on users' mental models and information seeking in a case-based reasoning retrieval system. - Wu He; Sanda Erdelez; Feng-Kwei Wang; Chi-Ren Shyu (Inf. Process. Manag., 2008)

Efficient SCOP-fold classification and retrieval using index-based protein substructure alignments. - Pin-Hao Chi; Bin Pang 001; Dmitry Korkin; Chi-Ren Shyu (Bioinform., 2009)

Editorial for the special issue of knowledge discovery and management in biomedical information systems. - Ying Liu 004; Lawrence Wing-Chi Chan; Chi-Ren Shyu; Ying Liu 007 (Inf. Syst. Frontiers, 2009)

Countering imbalanced datasets to improve adverse drug event predictive models in labor and delivery. - Laritza M. Taft; R. Scott Evans; Chi-Ren Shyu; Marlene J. Egger; Nitesh V. Chawla; Joyce A. Mitchell; Sidney N. Thornton; Bruce E. Bray; Michael W. Varner (J. Biomed. Informatics, 2009)

Multi-resolution tile-based follicle detection using color and textural information of follicular lymphoma IHC slides. - Jing Han; Dmitriy V. Shin; Gerald L. Arthur; Chi-Ren Shyu (BIBM Workshops, 2010)

An accurate classification of native and non-native protein-protein interactions using supervised and semi-supervised learning approaches. - Nan Zhao 002; Bin Pang 001; Chi-Ren Shyu; Dmitry Korkin (BIBM, 2010)

Visual information mining and ranking using graded relevance assessments in satellite image databases. - Adrian S. Barb; Chi-Ren Shyu (IGARSS, 2010)

Progressive spatial clustering of content-based satellite imagery retrieval results. - Matt Klaric; Grant J. Scott; Chi-Ren Shyu (IGARSS, 2010)

Visual-Semantic Modeling in Content-Based Geospatial Information Retrieval Using Associative Mining Techniques. - Adrian S. Barb; Chi-Ren Shyu (IEEE Geosci. Remote. Sens. Lett., 2010)

ProteinDBS v2.0: a web server for global and local protein structure search. - Chi-Ren Shyu; Bin Pang 001; Pin-Hao Chi; Nan Zhao 002; Dmitry Korkin; Dong Xu 002 (Nucleic Acids Res., 2010)

Search tactics for medical image retrieval. - Xin Wang; Sanda Erdelez; Yunhui Lu; Carla Allen; Blake Anderson; Hongfei Cao; Chi-Ren Shyu (ASIST, 2011)

Medical image describing behavior: a comparison between an expert and novice. - Xin Wang; Sanda Erdelez; Carla Allen; Blake Anderson; Hongfei Cao; Chi-Ren Shyu (iConference, 2011)

Multi-source and ontology-based retrieval engine for maize mutant phenotypes. - Jason M. Green; Jaturon Harnsomburana; Mary L. Schaeffer; Carolyn J. Lawrence; Chi-Ren Shyu (Database J. Biol. Databases Curation, 2011)

Computable visually observed phenotype ontological framework for plants. - Jaturon Harnsomburana; Jason M. Green; Adrian S. Barb; Mary L. Schaeffer; Leszek Vincent; Chi-Ren Shyu (BMC Bioinform., 2011)

A SNOMED supported ontological vector model for subclinical disorder detection using EHR similarity. - Lawrence Wing-Chi Chan; Ying Liu 004; Chi-Ren Shyu; Iris F. F. Benzie (Eng. Appl. Artif. Intell., 2011)

Entropy-Balanced Bitmap Tree for Shape-Based Object Retrieval From Large-Scale Satellite Imagery Databases. - Grant J. Scott; Matthew N. Klaric; Curt H. Davis; Chi-Ren Shyu (IEEE Trans. Geosci. Remote. Sens., 2011)

A Study of Dermatological Image Search, Archive, and Use Behaviors. - Jing Han; Xin Wang; Blake Anderson; Jonathan Dyer; Chi-Ren Shyu (AMIA, 2012)

Quantifying the quality of imaging interpretations. - Marius Petruc; Mihail Popescu; John L. Fresen; Dmitriy Shin; Chi-Ren Shyu (AMIA, 2012)

Improving disease management through a mobile application for lymphedema patients. - Christine Shuyu Xu; Blake Anderson; Jane Armer; Chi-Ren Shyu (Healthcom, 2012)

Associative semantic ranking of satellite images using PathFinder Network Scaling ensemble methods. - Adrian S. Barb; Chi-Ren Shyu (IGARSS, 2012)

Fast protein binding site comparisons using visual words representation. - Bin Pang 001; Nan Zhao 002; Dmitry Korkin; Chi-Ren Shyu (Bioinform., 2012)

Role of domain knowledge in developing user-centered medical-image indexing. - Xin Wang; Sanda Erdelez; Carla Allen; Blake Anderson; Hongfei Cao; Chi-Ren Shyu (J. Assoc. Inf. Sci. Technol., 2012)

DOMMINO: a database of macromolecular interactions. - Xingyan Kuang; Jing Ginger Han; Nan Zhao 002; Bin Pang 001; Chi-Ren Shyu; Dmitry Korkin (Nucleic Acids Res., 2012)

PBSword: a web server for searching similar protein-protein binding sites. - Bin Pang 001; Xingyan Kuang; Nan Zhao 002; Dmitry Korkin; Chi-Ren Shyu (Nucleic Acids Res., 2012)

Multi-Index Multi-Object Content-Based Retrieval. - Matthew N. Klaric; Grant J. Scott; Chi-Ren Shyu (IEEE Trans. Geosci. Remote. Sens., 2012)

Object behavior mining from mitochondiral shape databases for degenerated nerve disease studies. - Hongfei Cao; Jing Ginger Han; Chi-Ren Shyu (BIBM, 2013)

PBSalign: Sequence-independent local alignment of protein binding sites. - Bin Pang 001; David Schlessman; Xingyan Kuang; Nan Zhao 002; Daniel Shyu; Dmitry Korkin; Chi-Ren Shyu (BIBM, 2013)

Mining repetitive sequences using a big data ecosystem. - Michael Phinney; Hongfei Cao; Andi Dhroso; Chi-Ren Shyu (BIBM, 2013)

A system for limb-volume measurement using 3D models from an infrared depth sensor. - Guannan Lu; Guilherme N. DeSouza; Jane Armer; Blake Anderson; Chi-Ren Shyu (CICARE, 2013)

TeleMDID: Mobile technology applications for interactive diagnoses in teledermatology clinics. - Mirna Becevic; Blake Anderson; Jing Ginger Han; E. Rachel Mutrux; Lanis Hicks; Karen Edison; Chi-Ren Shyu (Healthcom, 2013)

Comparing limb-volume measurement techniques: 3D models from an infrared depth sensor versus water displacement. - Guannan Lu; Guilherme N. DeSouza; Jane Armer; Chi-Ren Shyu (Healthcom, 2013)

Fast GPU Algorithm for Analyzing Effective Connectivity in Functional Brain Imaging. - Lawrence Wing-Chi Chan; Bin Pang 001; Chi-Ren Shyu; Tao Chan; Pek-Lan Khong (ICONS, 2013)

Applications of PathFinder Network Scaling for Improving the Ranking of Satellite Images. - Adrian S. Barb; Roy B. Clariana; Chi-Ren Shyu (IEEE J. Sel. Top. Appl. Earth Obs. Remote. Sens., 2013)

MRSMRS: Mining repetitive sequences in a MapReduce setting. - Hongfei Cao; Michael Phinney; Devin Petersohn; Benjamin Merideth; Chi-Ren Shyu (BIBM, 2014)

Non-invasive ambulatory monitoring of complex sEMG patterns and its potential application in the detection of vocal dysfunctions. - Nicholas R. Smith; Teekayu Klongtruagrok; Guilherme N. DeSouza; Chi-Ren Shyu; Maria Dietrich; Matthew P. Page (Healthcom, 2014)

Uncovering influence links in molecular knowledge networks to streamline personalized medicine. - Dmitriy Shin; Gerald C. Arthur; Mihail Popescu; Dmitry Korkin; Chi-Ren Shyu (J. Biomed. Informatics, 2014)

Determining Effects of Non-synonymous SNPs on Protein-Protein Interactions using Supervised and Semi-supervised Learning. - Nan Zhao 002; Jing Ginger Han; Chi-Ren Shyu; Dmitry Korkin (PLoS Comput. Biol., 2014)

Integrated Clinical Decision Support Systems: Systematic Review and Classification of Online Medical Calculators. - Tim A. Green; Chi-Ren Shyu (AMIA, 2015)

Data Mining to Predict Healthcare Utilization in Managed Care Patients. - Lincoln Sheets; Michael A. Phinney; Sean Lander; Jerry C. Parker; Chi-Ren Shyu (AMIA, 2015)

Large scale multi-species palindrome study using distributed in-memory computing. - Devin Petersohn; Matthew Spencer; Alex Fratila; Chi-Ren Shyu (BIBM, 2015)

Genetic algorithm supported by graphical processing unit improves the exploration of effective connectivity in functional brain imaging. - Lawrence Wing-Chi Chan; Bin Pang 001; Chi-Ren Shyu; Tao Chan; Pek-Lan Khong (Frontiers Comput. Neurosci., 2015)

PubMed-supported clinical term weighting approach for improving inter-patient similarity measure in diagnosis prediction. - Lawrence Wing-Chi Chan; Ying Liu 004; Tao Chan; Helen K. W. Law; S. C. Cesar Wong; Andy Yeung; K. F. Lo; S. W. Yeung; K. Y. Kwok; William Chan; Thomas Lau; Chi-Ren Shyu (BMC Medical Informatics Decis. Mak., 2015)

An Integrated Approach to Sequence-Independent Local Alignment of Protein Binding Sites. - Bin Pang 001; David Schlessman; Xingyan Kuang; Nan Zhao 002; Daniel Shyu; Dmitry Korkin; Chi-Ren Shyu (IEEE ACM Trans. Comput. Biol. Bioinform., 2015)

RDF-Based Method to Uncover Implicit Health Communication Episodes from Unstructured Healthcare Data. - Pericles S. Giannaris; Zainab Al-Taie; Nattaphon Thanintorn; Ilker Ersoy; Chi-Ren Shyu; Richard D. Hammer; Dmitriy Shin (AMIA, 2016)

Automatic Workflow Extraction Using Sequential Pattern Mining and Electronic Medical Record Usage Data. - Tim A. Green; Michael A. Phinney; Chi-Ren Shyu (AMIA, 2016)

Contrasting Autism Subgroup Genotypes Using Frequent Pattern Mining. - Matthew Spencer; Chi-Ren Shyu (AMIA, 2016)

Large scale extraction of perfect and imperfect DNA palindromes using in-memory computing. - William Baskett; Matthew Spencer; Chi-Ren Shyu (BIBM, 2016)

Semi-hypothesis guided exploratory analysis for biomedical applications. - Chi-Ren Shyu (BIBM, 2016)

Cartesian Operations on Distributed Datasets Using Virtual Partitioning. - Michael Phinney; Sean Lander; Matthew Spencer; Chi-Ren Shyu (BigDataService, 2016)

DOMMINO 2.0: integrating structurally resolved protein-, RNA-, and DNA-mediated macromolecular interactions. - Xingyan Kuang; Andi Dhroso; Jing Ginger Han; Chi-Ren Shyu; Dmitry Korkin (Database J. Biol. Databases Curation, 2016)

Mining large-scale repetitive sequences in a MapReduce setting. - Hongfei Cao; Michael Phinney; Devin Petersohn; Benjamin Merideth; Chi-Ren Shyu (Int. J. Data Min. Bioinform., 2016)

Visual Reasoning Indexing and Retrieval Using In-Memory Computing. - Hongfei Cao; Yu Li; Carla M. Allen; Michael A. Phinney; Chi-Ren Shyu (Int. J. Semantic Comput., 2016)

Detection of Simulated Vocal Dysfunctions Using Complex sEMG Patterns. - Nicholas R. Smith; Luis A. Rivera; Maria Dietrich; Chi-Ren Shyu; Matthew P. Page; Guilherme N. DeSouza (IEEE J. Biomed. Health Informatics, 2016)

Efficient GPU-accelerated extraction of imperfect inverted repeats from DNA sequences. - William Baskett; Matthew Spencer; Chi-Ren Shyu (BIBM, 2017)

Geospatial health context table. - Timothy L. Haithcoat; Chi-Ren Shyu (BIBM, 2017)

Discovering multifactorial associations with the development of age-related cataract using contrast mining. - Murugesan Raju; Danlu Liu; Frederick W. Fraunfelder; Chi-Ren Shyu (BIBM, 2017)

Quasi-palindrome effects on DNA sequence evolution. - Matthew Spencer; Jacob Gotberg; Chi-Ren Shyu (BIBM, 2017)

In-Memory Distributed Indexing for Large-Scale Media Data Retrieval. - Yinmiao Ma; Danlu Liu; Grant J. Scott; Jeffrey Uhlmann; Chi-Ren Shyu (ISM, 2017)

Contrast Mining for Pattern Discovery and Descriptive Analytics to Tailor Sub-Groups of Patients Using Big Data Solutions. - Michael A. Phinney; Yan Zhuang; Sean Lander; Lincoln Sheets; Jerry C. Parker; Chi-Ren Shyu (MedInfo, 2017)

Combining Contrast Mining with Logistic Regression To Predict Healthcare Utilization in a Managed Care Population. - Lincoln Sheets; Gregory F. Petroski; Yan Zhuang; Michael Phinney; Bin Ge; Jerry C. Parker; Chi-Ren Shyu (Appl. Clin. Inform., 2017)

Leveraging Location to Integrate and Access Information for Analyzing Health Context. - Timothy L. Haithcoat; Chi-Ren Shyu (AMIA, 2018)

Applying Blockchain Technology for Health Information Exchange and Persistent Monitoring for Clinical Trials. - Yan Zhuang; Lincoln Sheets; Zonyin Shae; Jeffrey J. P. Tsai; Chi-Ren Shyu (AMIA, 2018)

Heritable genotype contrast mining reveals novel gene associations specific to autism subgroups. - Matthew Spencer; Nicole Takahashi; Sounak Chakraborty; Judith H. Miles; Chi-Ren Shyu (J. Biomed. Informatics, 2018)

Applying Blockchain Technology to Enhance Clinical Trial Recruitment. - Yan Zhuang; Lincoln Sheets; Zonyin Shae; Yin-Wu Chen; Jeffrey J. P. Tsai; Chi-Ren Shyu (AMIA, 2019)

Quantifying and understanding the differences in visual activities with contrast subsequences. - Yu Li; Carla Allen; Chi-Ren Shyu (ETRA, 2019)

Developing a Taxonomy of Online Medical Calculators for Assessing Automatability and Clinical Efficiency Improvements. - Tim A. Green; Chi-Ren Shyu (MedInfo, 2019)

Modeling of Contextual Information in Knowledge Graphs of Diagnostic Reports. - Pericles S. Giannaris; Cynthia Tang; Olha Kholod; Steve Hanson; Chi-Ren Shyu; Richard D. Hammer; Dong Xu 002; Dmitriy Shin (SWH@ISWC, 2019)

Medical calculators: Prevalence, and barriers to use. - Tim A. Green; Stevan Whitt; Jeffery L. Belden; Sanda Erdelez; Chi-Ren Shyu (Comput. Methods Programs Biomed., 2019)

Advancing health equity and access using telemedicine: a geospatial assessment. - Saif S. Khairat; Timothy L. Haithcoat; Songzi Liu; Tanzila Zaman; Barbara Edson; Robert Gianforcaro; Chi-Ren Shyu (J. Am. Medical Informatics Assoc., 2019)

Drug Repositioning for Colorectal Cancer Patient Subgroups Using Exploratory Mining and Network Analysis. - Zainab Al-Taie; Danlu Liu; Christos Papageorgiou; Jussuf T. Kaifi; Jonathan B. Mitchem; Chi-Ren Shyu (AMIA, 2020)

Differentiating Genetic Risk Factors Between Triple Negative and Luminal Breast Cancer Subtypes Using Long Contrast Patterns Mining. - Danlu Liu; Zainab Al-Taie; Yuanyuan Shen; Christos Papageorgiou; Chi-Ren Shyu (AMIA, 2020)

Using novel exploratory subgroup mining to determine complication patterns of post colectomy based on hospital characteristics. - Yuanyuan Shen; Danlu Liu; Chi-Ren Shyu; Jonathan B. Mitchem (AMIA, 2020)

A Deep Exploratory Mining Approach for Discovering Associations between Family History of Type 1 Diabetes and Autoimmune and Related Conditions. - Erin M. Tallon; Mark Clements; Danlu Liu; Katrina Boles; Chi-Ren Shyu (AMIA, 2020)

Development of A Blockchain Framework for Virtual Clinical Trials. - Yan Zhuang; Lincoln Sheets; Xiyuan Gao; Yuanyuan Shen; Zonyin Shae; Jeffrey J. P. Tsai; Chi-Ren Shyu (AMIA, 2020)

Identifying patient-specific flow of signal transduction perturbed by multiple single-nucleotide alterations. - Olha Kholod; Chi-Ren Shyu; Jonathan B. Mitchem; Jussuf T. Kaifi; Dmitriy Shin (Quant. Biol., 2020)

Exploratory Data Mining for Subgroup Cohort Discoveries and Prioritization. - Danlu Liu; William Baskett; David Q. Beversdorf; Chi-Ren Shyu (IEEE J. Biomed. Health Informatics, 2020)

A Patient-Centric Health Information Exchange Framework Using Blockchain Technology. - Yan Zhuang; Lincoln R. Sheets; Yin-Wu Chen; Zonyin Shae; Jeffrey J. P. Tsai; Chi-Ren Shyu (IEEE J. Biomed. Health Informatics, 2020)

Explainable artificial intelligence in high-throughput drug repositioning for subgroup stratifications with interventionable potential. - Zainab Al-Taie; Danlu Liu; Jonathan B. Mitchem; Christos Papageorgiou; Jussuf T. Kaifi; Wesley C. Warren; Chi-Ren Shyu (J. Biomed. Informatics, 2021)

Found in Translation: Transforming Rules-Based Diabetes Phenotyping Algorithms into Reproducible Diabetes Cohorts from Real-World Data. - Erin M. Tallon; Mark Clements; Chi-Ren Shyu (AMIA, 2022)

Thoughts on Non-IID Data Impact in Healthcare with Federated Learning Medical Blockchain. - Zon-Yin Shae; Kun-Yi Chen; Chi-Yu Chang; Yuan-Yu Tsai; Che-Yi Chou; William Baskett; Chi-Ren Shyu; Jeffrey J. P. Tsai (CogMI, 2022)

RHPTree - Risk Hierarchical Pattern Tree for Scalable Long Pattern Mining. - Danlu Liu; Yu Li; William Baskett; Dan Lin; Chi-Ren Shyu (ACM Trans. Knowl. Discov. Data, 2022)

Automated Detection of Poultry Farms from Aerial Images for Actionable AI System toward Biosecurity Applications. - Yu Li; Rana Das; Cuong Duong; Teng-Teeh Lim; Timothy L. Haithcoat; Ilker Ersoy; Chi-Ren Shyu (AIPR, 2023)

Understanding common key indicators of successful and unsuccessful cancer drug trials using a contrast mining framework on ClinicalTrials.gov. - Shu-Kai Chang; Danlu Liu; Jonathan B. Mitchem; Christos Papageorgiou; Jussuf T. Kaifi; Chi-Ren Shyu (J. Biomed. Informatics, 2023)

Self-sovereign identity empowered non-fungible patient tokenization for health information exchange using blockchain technology. - Yan Zhuang; Chi-Ren Shyu; Shenda Hong; Pengfei Li; Luxia Zhang (Comput. Biol. Medicine, 2023)

Analysis of A Malicious Deutsch-Jozsa Circuit. - Jaden Hawley; Chi-Ren Shyu (QCE, 2024)

Identifying gene expression programs in single-cell RNA-seq data using linear correlation explanation. - Yulia I. Nussbaum; K. S. M. Tozammel Hossain; Jussuf T. Kaifi; Wesley C. Warren; Chi-Ren Shyu; Jonathan B. Mitchem (J. Biomed. Informatics, 2024)

Addressing Small Sample Size and Improving Interpretability in Biomedical Applications with Adaptive Complexity Deep Neural Networks. - William Baskett; Chi-Ren Shyu (ICHI, 2025)

Identifying homogenous patient subgroups using transformer based hierarchical clustering of heterogeneous Mixed-Modality medical data. - William Baskett; Benjamin Black; Adnan I. Qureshi; Chi-Ren Shyu (J. Biomed. Informatics, 2025)

Effective Non-IID Degree Estimation for Robust Federated Learning in Healthcare Datasets. - Kun-Yi Chen; Chi-Ren Shyu; Yuan-Yu Tsai; William Baskett; Chi-Yu Chang; Che-Yi Chou; Jeffrey J. P. Tsai; Zon-Yin Shae (J. Heal. Informatics Res., 2025)