A novel statistical method for quantitative comparison of multiple ChIP-seq datasets. - Li Chen 029; Chi Wang 003; Zhaohui S. Qin; Hao Wu 003 (Bioinform., 2015)

PROPER: comprehensive power evaluation for differential expression using RNA-seq. - Hao Wu 003; Chi Wang 003; Zhijin Wu (Bioinform., 2015)

To select relevant features for longitudinal gene expression data by extending a pathway analysis method. - Suyan Tian; Chi Wang 003; Howard H. Chang (F1000Research, 2018)

A longitudinal feature selection method identifies relevant genes to distinguish complicated injury and uncomplicated injury over time. - Suyan Tian; Chi Wang 003; Howard H. Chang (BMC Medical Informatics Decis. Mak., 2018)

SDA: a semi-parametric differential abundance analysis method for metabolomics and proteomics data. - Yuntong Li; Teresa W.-M. Fan; Andrew N. Lane; Woo-Young Kang; Susanne M. Arnold; Arnold J. Stromberg; Chi Wang 003; Li Chen (BMC Bioinform., 2019)

A probabilistic method for leveraging functional annotations to enhance estimation of the temporal order of pathway mutations during carcinogenesis. - Menghan Wang; Tianxin Yu; Jinpeng Liu; Li Chen; Arnold J. Stromberg; John L. Villano; Susanne M. Arnold; Chunming Liu; Chi Wang 003 (BMC Bioinform., 2019)

FastCount: a fast gene count software for single-cell RNA-seq data. - Jinpeng Liu; Xinan Liu; Ye Yu 001; Chi Wang 003; Jinze Liu (BCB, 2021)

MEScan: a powerful statistical framework for genome-scale mutual exclusivity analysis of cancer mutations. - Sisheng Liu; Jinpeng Liu; Yanqi Xie; Tingting Zhai; Eugene W. Hinderer; Arnold J. Stromberg; Nathan L. Vanderford; Jill M. Kolesar; Hunter N. B. Moseley; Li Chen; Chunming Liu; Chi Wang 003 (Bioinform., 2021)

Bayesian kinetic modeling for tracer-based metabolomic data. - Xu Zhang; Ya Su; Andrew N. Lane; Arnold J. Stromberg; Teresa W.-M. Fan; Chi Wang 003 (BMC Bioinform., 2023)

Correction: Bayesian kinetic modeling for tracer-based metabolomic data. - Xu Zhang; Ya Su; Andrew N. Lane; Arnold J. Stromberg; Teresa W.-M. Fan; Chi Wang 003 (BMC Bioinform., 2024)