POINT: a database for the prediction of protein-protein interactions based on the orthologous interactome. - Tao-Wei Huang; An-Chi Tien; Wen-Shien Huang; Yuan-Chii G. Lee; Chin-Lin Peng; Huei-Hun Tseng; Cheng-Yan Kao; Chi-Ying F. Huang (Bioinform., 2004)

A stochastic differential equation model for quantifying transcriptional regulatory network in Saccharomyces cerevisiae. - Kuang-Chi Chen; Tse-Yi Wang; Huei-Hun Tseng; Chi-Ying F. Huang; Cheng-Yan Kao (Bioinform., 2005)

Detection of the inferred interaction network in hepatocellular carcinoma from EHCO (Encyclopedia of Hepatocellular Carcinoma genes Online). - Chun-Nan Hsu; Jin-Mei Lai; Chia-Hung Liu; Huei-Hun Tseng; Chih-Yun Lin; Kuan-Ting Lin; Hsu-Hua Yeh; Ting-Yi Sung; Wen-Lian Hsu; Li-Jen Su; Sheng-An Lee; Chang-Han Chen; et al. (BMC Bioinform., 2007)

PhosphoPOINT: a comprehensive human kinase interactome and phospho-protein database. - Chia-Ying Yang; Chao-Hui Chang; Ya-Ling Yu; Tsu-Chun Emma Lin; Sheng-An Lee; Chueh-Chuan Yen; Jinn-Moon Yang; Jin-Mei Lai; Yi-Ren Hong; Tzu-Ling Tseng; Kun-Mao Chao; Chi-Ying F. Huang (ECCB, 2008)

Ortholog-based protein-protein interaction prediction and its application to inter-species interactions. - Sheng-An Lee; Chen-hsiung Chan; Chi-Hung Tsai; Jin-Mei Lai; Feng-Sheng Wang; Cheng-Yan Kao; Chi-Ying F. Huang (BMC Bioinform., 2008)

POINeT: protein interactome with sub-network analysis and hub prioritization. - Sheng-An Lee; Chen-hsiung Chan; Tzu-Chi Chen; Chia-Ying Yang; Kuo-Chuan Huang; Chi-Hung Tsai; Jin-Mei Lai; Feng-Sheng Wang; Cheng-Yan Kao; Chi-Ying F. Huang (BMC Bioinform., 2009)

Inferring a transcriptional regulatory network of the cytokinesis-related genes by network component analysis. - Shun-Fu Chen; Yue-Li Juang; Wei-Kang Chou; Jin-Mei Lai; Chi-Ying F. Huang; Cheng-Yan Kao; Feng-Sheng Wang (BMC Syst. Biol., 2009)

Investigating Cancer-related Proteins Specific Domain Interactions and Differential Protein Interactions Caused by Alternative Splicing. - Yu-Liang Lee; Jie-Wei Weng; Wen-Chin Chiang; Yi-Wen Lin; Ka-Lok Ng; Jeffrey J. P. Tsai; Chi-Ying F. Huang (BIBE, 2011)

miRTarBase: a database curates experimentally validated microRNA-target interactions. - Sheng-Da Hsu; Feng-Mao Lin; Wei-Yun Wu; Chao Liang; Wei-Chih Huang; Wen-Ling Chan; Wen-Ting Tsai; Goun-Zhou Chen; Chia-Jung Lee; Chih-Min Chiu; Chia-Hung Chien; Ming-Chia Wu; et al. (Nucleic Acids Res., 2011)

A Multiclass Classification Tool Using Cloud Computing Architecture. - Chia-Ping Shen; Chia-Hung Liu; Feng-Sheng Lin; Han Lin; Chi-Ying F. Huang; Cheng-Yan Kao; Feipei Lai; Jeng-Wei Lin (ASONAM, 2012)

Differential network biology reveals a positive correlation between a novel protein-protein interaction and cancer cells migration. - Chia-Hung Liu; Tzu-Chi Chen; Chun-Houh Chen; Cheng-Yan Kao; Chi-Ying F. Huang (EMBC, 2013)

Drug repositioning for non-small cell lung cancer by using machine learning algorithms and topological graph theory. - Chien-Hung Huang; Peter Mu-Hsin Chang; Chia-Wei Hsu; Chi-Ying F. Huang; Ka-Lok Ng (BMC Bioinform., 2016)

Drug repurposing and therapeutic anti-microRNA predictions for inhibition of oxidized low-density lipoprotein-induced vascular smooth muscle cell-associated diseases. - Shun-Tsung Chen; Chien-Hung Huang; Victor C. Kok; Chi-Ying F. Huang; Jin-Shuei Ciou; Jeffrey J. P. Tsai; Nilubon Kurubanjerdjit; Ka-Lok Ng (J. Bioinform. Comput. Biol., 2017)

Flux balance analysis predicts Warburg-like effects of mouse hepatocyte deficient in miR-122a. - Hua-Qing Wu; Mei-Ling Cheng; Jin-Mei Lai; Hsuan-Hui Wu; Meng-Chun Chen; Wen-Huan Liu; Wu-Hsiung Wu; Peter Mu-Hsin Chang; Chi-Ying F. Huang; Ann-Ping Tsou; Ming-Shi Shiao; Feng-Sheng Wang (PLoS Comput. Biol., 2017)