Sfold web server for statistical folding and rational design of nucleic acids. - Ye Ding; Chi Yu Chan; Charles E. Lawrence (Nucleic Acids Res., 2004)

Structure clustering features on the Sfold Web server. - Chi Yu Chan; Charles E. Lawrence; Ye Ding (Bioinform., 2005)

A structural analysis of in vitro catalytic activities of hammerhead ribozymes. - Yu Shao; Susan Wu; Chi Yu Chan; Jessie R. Klapper; Erasmus Schneider; Ye Ding (BMC Bioinform., 2007)

Analysis of Microrna-Target Interactions by a Target Structure Based Hybridization Model. - Dang D. Long; Chi Yu Chan; Ye Ding (Pacific Symposium on Biocomputing, 2008)

A structural interpretation of the effect of GC-content on efficiency of RNA interference. - Chi Yu Chan; C. Steven Carmack; Dang D. Long; Anil Maliyekkel; Yu Shao; Igor B. Roninson; Ye Ding (BMC Bioinform., 2009)