Performance of communication-induced checkpointing algorithms. - D. Manivannan 001; Chi Zhang 013 (Comput. Syst. Sci. Eng., 2003)

Web-based toolkits for topology prediction of transmembrane helical proteins, fold recognition, structure and binding scoring, folding-kinetics analysis and comparative analysis of domain combinations. - Hongyi Zhou; Chi Zhang 013; Song Liu; Yaoqi Zhou (Nucleic Acids Res., 2005)

Prediction of antigenic epitopes on protein surfaces by consensus scoring. - Shide Liang; Dandan Zheng 003; Chi Zhang 013; Martin Zacharias (BMC Bioinform., 2009)

EPSVR and EPMeta: prediction of antigenic epitopes using support vector regression and multiple server results. - Shide Liang; Dandan Zheng 003; Daron M. Standley; Bo Yao; Martin Zacharias; Chi Zhang 013 (BMC Bioinform., 2010)

Fast and accurate prediction of protein side-chain conformations. - Shide Liang; Dandan Zheng 003; Chi Zhang 013; Daron M. Standley (Bioinform., 2011)

DFVF: database of fungal virulence factors. - Tao Lu; Bo Yao; Chi Zhang 013 (Database J. Biol. Databases Curation, 2012)

Fuzzy clustering of CPP family in plants with evolution and interaction analyses. - Tao Lu; Yongchao Dou; Chi Zhang 013 (BMC Bioinform., 2013)

A novel function prediction approach using protein overlap networks. - Shide Liang; Dandan Zheng 003; Daron M. Standley; Huarong Guo; Chi Zhang 013 (BMC Syst. Biol., 2013)

Identification of RNA silencing components in soybean and sorghum. - Xiang Liu; Tao Lu; Yongchao Dou; Bin Yu; Chi Zhang 013 (BMC Bioinform., 2014)

LEAP: Highly accurate prediction of protein loop conformations by integrating coarse-grained sampling and optimized energy scores with all-atom refinement of backbone and side chains. - Shide Liang; Chi Zhang 013; Yaoqi Zhou (J. Comput. Chem., 2014)

NanoAsPipe: A transcriptome analysis and alternative splicing detection pipeline for MinION long-read RNA-seq. - Kan Liu; Shangang Jia; Qian Du 003; Chi Zhang 013 (BIBM, 2017)

iVAR: Interactive visual analytics of radiomics features from large-scale medical images. - Lina Yu; Hengle Jiang; Hongfeng Yu 001; Chi Zhang 013; Josiah Mcallister; Dandan Zheng 003 (IEEE BigData, 2017)

A mapping-by-sequencing tool for searching causative genes in mutants. - Shangang Jia; David Holding; Chi Zhang 013 (EIT, 2017)

Identification of differential alternative splicing events with an adjusted beta-distribution model. - Kan Liu; Qian Du 003; Guodong Ren; Bin Yu; Chi Zhang 013 (EIT, 2017)

An Exome-seq Based Tool for Mapping and Selection of Candidate Genes in Maize Deletion Mutants. - Shangang Jia; Kyla Morton; Chi Zhang 013; David Holding (Genom. Proteom. Bioinform., 2018)

RGPDB: database of root-associated genes and promoters in maize, soybean, and sorghum. - Gleb Moisseyev; Kiyoul Park; Alix Cui; Daniel Freitas; Divith Rajagopal; Anji Reddy Konda; Madalayne Martin-Olenski; Mackenzie Mcham; Kan Liu; Qian Du 003; James C. Schnable; Etsuko N. Moriyama; et al. (Database J. Biol. Databases Curation, 2020)

The Potential Use of Radiomics with Pre-Radiation Therapy MR Imaging in Predicting Risk of Pseudoprogression in Glioblastoma Patients. - Michael Baine; Justin Burr; Qian Du 003; Chi Zhang 072; Xiaoying Liang; Luke Krajewski; Laura Zima; Gerard Rux; Chi Zhang 013; Dandan Zheng 003 (J. Imaging, 2021)

Tissue-Specific Color Encoding and GAN Synthesis for Enhanced Medical Image Generation. - Yu Shi; Hannah Tang; Jianxin Sun 001; Xinyan Xie; Huijing Du; Dandan Zheng 003; Chi Zhang 013; Hongfeng Yu 001 (IEEE Big Data, 2023)

3DGAUnet: 3D generative adversarial networks with a 3D U-Net based generator to achieve the accurate and effective synthesis of clinical tumor image data for pancreatic cancer. - Yu Shi; Hannah Tang; Michael Baine; Michael A. Hollingsworth; Huijing Du; Dandan Zheng 003; Chi Zhang 013; Hongfeng Yu 001 (CoRR, 2023)

Ab Initio Prediction of 3-D Conformations for Protein Long Loops with High Accuracy and Applications to Antibody CDRH3 Modeling. - Shide Liang; Chi Zhang 013; Mingfu Zhu (J. Chem. Inf. Model., 2023)