Rapid classification of group B Streptococcus serotypes based on matrix-assisted laser desorption ionization-time of flight mass spectrometry and machine learning techniques. - Hsin-Yao Wang; Wen-Chi Li; Kai-Yao Huang; Chia-Ru Chung; Jorng-Tzong Horng; Jen-Fu Hsu; Jang-Jih Lu; Tzong-Yi Lee (BMC Bioinform., 2019)

Characterization and identification of antimicrobial peptides with different functional activities. - Chia-Ru Chung; Ting-Rung Kuo; Li-Ching Wu; Tzong-Yi Lee; Jorng-Tzong Horng (Briefings Bioinform., 2020)

A large-scale investigation and identification of methicillin-resistant Staphylococcus aureus based on peaks binning of matrix-assisted laser desorption ionization-time of flight MS spectra. - Hsin-Yao Wang; Chia-Ru Chung; Zhuo Wang; Shangfu Li; Bo-Yu Chu; Jorng-Tzong Horng; Jang-Jih Lu; Tzong-Yi Lee (Briefings Bioinform., 2021)

An Intelligent Virtual-Reality System With Multi-Model Sensing for Cue-Elicited Craving in Patients With Methamphetamine Use Disorder. - Meng-Chang Tsai; Chia-Ru Chung; Chun-Chuan Chen; Jyun-Yu Chen; Shih-Ching Yeh; Chun-Han Lin; Ying-Ju Chen; Ming-Che Tsai; Ya-Ling Wang 004; Chia-Ju Lin; Eric Hsiao-Kuang Wu (IEEE Trans. Biomed. Eng., 2021)

dbAMP 2.0: updated resource for antimicrobial peptides with an enhanced scanning method for genomic and proteomic data. - Jhih-Hua Jhong; Lantian Yao; Yuxuan Pang; Zhongyan Li; Chia-Ru Chung; Rulan Wang; Shangfu Li; Wenshuo Li; Mengqi Luo; Renfei Ma; Yuqi Huang; Xiaoning Zhu; et al. (Nucleic Acids Res., 2022)

Neuronal Abnormalities Induced by an Intelligent Virtual Reality System for Methamphetamine Use Disorder. - Chun-Chuan Chen; Meng-Chang Tsai; Eric Hsiao-Kuang Wu; Chia-Ru Chung; Yuchi Lee; Po-Ru Chiu; Po-Yi Tsai; Shao-Rong Sheng; Shih-Ching Yeh (IEEE J. Biomed. Health Informatics, 2022)

Identification of species-specific RNA N6-methyladinosine modification sites from RNA sequences. - Rulan Wang; Chia-Ru Chung; Hsien-Da Huang; Tzong-Yi Lee (Briefings Bioinform., 2023)

A risk assessment framework for multidrug-resistant Staphylococcus aureus using machine learning and mass spectrometry technology. - Zhuo Wang; Yuxuan Pang; Chia-Ru Chung; Hsin-Yao Wang; Haiyan Cui; Ying-Chih Chiang; Jorng-Tzong Horng; Jang-Jih Lu; Tzong-Yi Lee (Briefings Bioinform., 2023)

Predicting Anti-inflammatory Peptides by Ensemble Machine Learning and Deep Learning. - Jiahui Guan; Lantian Yao; Chia-Ru Chung; Peilin Xie; Yilun Zhang; Junyang Deng; Ying-Chih Chiang; Tzong-Yi Lee (J. Chem. Inf. Model., 2023)

A two-stage computational framework for identifying antiviral peptides and their functional types based on contrastive learning and multi-feature fusion strategy. - Jiahui Guan; Lantian Yao; Peilin Xie; Chia-Ru Chung; Yixian Huang; Ying-Chih Chiang; Tzong-Yi Lee (Briefings Bioinform., 2024)

ACP-CapsPred: an explainable computational framework for identification and functional prediction of anticancer peptides based on capsule network. - Lantian Yao; Peilin Xie; Jiahui Guan; Chia-Ru Chung; Wenyang Zhang; Junyang Deng; Yixian Huang; Ying-Chih Chiang; Tzong-Yi Lee (Briefings Bioinform., 2024)

CapsEnhancer: An Effective Computational Framework for Identifying Enhancers Based on Chaos Game Representation and Capsule Network. - Lantian Yao; Peilin Xie; Jiahui Guan; Chia-Ru Chung; Yixian Huang; Yuxuan Pang; Huacong Wu; Ying-Chih Chiang; Tzong-Yi Lee (J. Chem. Inf. Model., 2024)

Virtual-Reality-Based Supermarket for Intellectual Disability Classification, Diagnostics, and Assessment. - Chih-Hsuan Chen; Chia-Ru Chung; Hsuan-Yu Yang; Shih-Ching Yeh; Eric Hsiao-Kuang Wu; Hsin-Jung Ting (IEEE Trans. Learn. Technol., 2024)

Anti-Drugs Chatbot: Chinese BERT-Based Cognitive Intent Analysis. - Jui-Hsuan Lee; Eric Hsiao-Kuang Wu; Yu-Yen Ou; Yueh-Che Lee; Cheng-Hsun Lee; Chia-Ru Chung (IEEE Trans. Comput. Soc. Syst., 2024)

Qigong Master: A Qigong-Based Attention Training Game Using Action Recognition and Balance Analysis. - Chia-Ru Chung; Shih-Ching Yeh; Eric Hsiao-Kuang Wu; Sheng-Yang Lin (IEEE Trans. Games, 2024)

Mobile Virtual Assistant for Multi-Modal Depression-Level Stratification. - Eric Hsiao-Kuang Wu; Ting-Yu Gao; Chia-Ru Chung; Chun-Chuan Chen; Chia-Fen Tsai; Shih-Ching Yeh (IEEE Trans. Affect. Comput., 2025)