Computational modeling with forward and reverse engineering links signaling network and genomic regulatory responses: NF-kappaB signaling-induced gene expression responses in inflammation. - Shih Chi Peng; David Shan-Hill Wong; Kai Che Tung; Yan Yu Chen; Chun Cheih Chao; Chien Hua Peng; Yung-Jen Chuang; Chuan Yi Tang (BMC Bioinform., 2010)

A novel method to identify cooperative functional modules: study of module coordination in the Saccharomyces cerevisiae cell cycle. - Jeh-Ting Hsu; Chien Hua Peng; Wen-Ping Hsieh; Chung-Yu Lan; Chuan Yi Tang (BMC Bioinform., 2011)