Chien-Yu Chen

Orcid: 0000-0002-6940-6389

Affiliations:
  • National Taiwan University, Department of Bio-Industrial Mechatronics Engineering


According to our database1, Chien-Yu Chen authored at least 50 papers between 2000 and 2024.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.

Timeline

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Bibliography

2024
Evaluating the Performance of Protein Structure Prediction in Detecting Structural Changes of Pathogenic Nonsynonymous Single Nucleotide Variants.
Proceedings of the 17th International Joint Conference on Biomedical Engineering Systems and Technologies, 2024

2022
pubmedKB: an interactive web server for exploring biomedical entity relations in the biomedical literature.
Nucleic Acids Res., 2022

2021
DockCoV2: a drug database against SARS-CoV-2.
Nucleic Acids Res., 2021

ezGeno: an automatic model selection package for genomic data analysis.
Bioinform., 2021

Evaluation of using WGS/WES to characterize ACMG actionable genes in genetic testing reports.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2021

2020
GenEpi: gene-based epistasis discovery using machine learning.
BMC Bioinform., 2020

Comprehensive Study of Keywords for Sequence-Based Automatic Annotation of Protein Functions.
Proceedings of the 20th IEEE International Conference on Bioinformatics and Bioengineering, 2020

2019
Predicting Pathogenic Non-coding Variants on Imbalanced Data Set using Cluster Ensemble Sampling.
Proceedings of the 19th IEEE International Conference on Bioinformatics and Bioengineering, 2019

2018
Advanced Orientation Robust Face Detection Algorithm Using Prominent Features and Hybrid Learning Techniques.
Proceedings of the IEEE Visual Communications and Image Processing, 2018

Advanced Ear Detection Algorithm Using Faster R-CNN, Refocus Filters, and the Gradient Map.
Proceedings of the 23rd IEEE International Conference on Digital Signal Processing, 2018

2013
PiDNA: predicting protein-DNA interactions with structural models.
Nucleic Acids Res., 2013

2012
DBD2BS: connecting a DNA-binding protein with its binding sites.
Nucleic Acids Res., 2012

<i>De novo</i> motif discovery facilitates identification of interactions between transcription factors in <i>Saccharomyces cerevisiae</i>.
Bioinform., 2012

2011
WildSpan: mining structured motifs from protein sequences.
Algorithms Mol. Biol., 2011

2010
Predicting DNA-binding locations and orientation on proteins using knowledge-based learning of geometric properties.
Proceedings of the 2010 IEEE International Conference on Bioinformatics and Biomedicine, 2010

Sequence composition analysis on arsenic-binding proteins in human cells.
Proceedings of the 2010 IEEE International Conference on Bioinformatics and Biomedicine Workshops, 2010

2009
seeMotif: exploring and visualizing sequence motifs in 3D structures.
Nucleic Acids Res., 2009

Statistical identification of gene association by CID in application of constructing ER regulatory network.
BMC Bioinform., 2009

2008
E1DS: catalytic site prediction based on 1D signatures of concurrent conservation.
Nucleic Acids Res., 2008

Cross-generation and cross-laboratory predictions of Affymetrix microarrays by rank-based methods.
J. Biomed. Informatics, 2008

2007
iPDA: integrated protein disorder analyzer.
Nucleic Acids Res., 2007

Identification of hot regions in protein-protein interactions by sequential pattern mining.
BMC Bioinform., 2007

Prediction of Protein Secondary Structures with a Novel Kernel Density Estimator.
Proceedings of the 2007 International Conference on Machine Learning; Models, 2007

Enhancing Protein Disorder Detection by Refined Secondary Structure Prediction.
Proceedings of the Bioinformatics Research and Development, First International Conference, 2007

2006
Pattern classification in DNA microarray data of multiple tumor types.
Pattern Recognit., 2006

Exploiting homogeneity in protein sequence clusters for construction of protein family hierarchies.
Pattern Recognit., 2006

MAGIIC-PRO: detecting functional signatures by efficient discovery of long patterns in protein sequences.
Nucleic Acids Res., 2006

Protein disorder prediction by condensed PSSM considering propensity for order or disorder.
BMC Bioinform., 2006

Efficient Discovery of Structural Motifs from Protein Sequences with Combination of Flexible Intra- and Inter-block Gap Constraints.
Proceedings of the Advances in Knowledge Discovery and Data Mining, 2006

2005
Data classification with radial basis function networks based on a novel kernel density estimation algorithm.
IEEE Trans. Neural Networks, 2005

A statistics-based approach to control the quality of subclusters in incremental gravitational clustering.
Pattern Recognit., 2005

Analysis and summarization of correlations in data cubes and its application in microarray data analysis.
Intell. Data Anal., 2005

Prediction of Outer Membrane Proteins by Support Vector Machines Using Combinations of Gapped Amino Acid Pair Compositions.
Proceedings of the Fifth IEEE International Symposium on Bioinformatic and Bioengineering (BIBE 2005), 2005

Genetic algorithms and silhouette measures applied to microarray data classification.
Proceedings of 3rd Asia-Pacific Bioinformatics Conference, 17-21 January 2005, Singapore, 2005

2004
ProteMiner-SSM: a web server for efficient analysis of similar protein tertiary substructures.
Nucleic Acids Res., 2004

Image Reconstruction With Improved Super-Resolution Algorithm.
Int. J. Pattern Recognit. Artif. Intell., 2004

Incremental generation of summarized clustering hierarchy for protein family analysis.
Bioinform., 2004

The Combination of Kaiser Window and Moving Average for the Low-Pass Filtering of the Remote ECG Signals.
Proceedings of the 17th IEEE Symposium on Computer-Based Medical Systems (CBMS 2004), 2004

An Efficient Mechanism for Prediction of Protein-Ligand Interactions Based on Analysis of Protein Tertiary Substructures.
Proceedings of the 4th IEEE International Symposium on BioInformatics and BioEngineering (BIBE 2004), 2004

2003
Geometric Reed-Solomon codes of length 64 and 65 over F<sub>8</sub>.
IEEE Trans. Inf. Theory, 2003

Material compatibility constraints for make-to-order production planning.
Oper. Res. Lett., 2003

Expediting model selection for Support Vector Machines based on data reduction.
Proceedings of the IEEE International Conference on Systems, 2003

Expediting protein structural analysis with an efficient kernel density estimation algorithm.
Proceedings of the Fifth International Symposium on Multimedia Software Engineering, 2003

Design of an incremental clustering package for protein function and family analysis.
Proceedings of the Fifth International Symposium on Multimedia Software Engineering, 2003

2002
An Incremental Hierarchical Data Clustering Algorithm Based on Gravity Theory.
Proceedings of the Advances in Knowledge Discovery and Data Mining, 2002

Analysis and summarization of correlations in data cubes.
Proceedings of the Data Mining and Knowledge Discovery: Theory, 2002

2001
A Programmable Parallel VLSI Architecture for 2-D Discrete Wavelet Transform.
J. VLSI Signal Process., 2001

Quantity and Due Date Quoting Available to Promise.
Inf. Syst. Frontiers, 2001

A Study on the Hierarchical Data Clustering Algorithm Based on Gravity Theory.
Proceedings of the Principles of Data Mining and Knowledge Discovery, 2001

2000
A programmable VLSI architecture for 2-D discrete wavelet transform.
Proceedings of the IEEE International Symposium on Circuits and Systems, 2000


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