Opening up the blackbox: an interpretable deep neural network-based classifier for cell-type specific enhancer predictions. - Seong Gon Kim; Nawanol Theera-Ampornpunt; Chih-Hao Fang; Mrudul Harwani; Ananth Grama; Somali Chaterji (BMC Syst. Biol., 2016)

Distributed Second-order Convex Optimization. - Chih-Hao Fang; Sudhir B. Kylasa; Farbod Roosta-Khorasani; Michael W. Mahoney; Ananth Grama (CoRR, 2018)

AIKYATAN: mapping distal regulatory elements using convolutional learning on GPU. - Chih-Hao Fang; Nawanol Theera-Ampornpunt; Michael A. Roth; Ananth Grama; Somali Chaterji (BMC Bioinform., 2019)

Newton-ADMM: a distributed GPU-accelerated optimizer for multiclass classification problems. - Chih-Hao Fang; Sudhir B. Kylasa; Fred Roosta; Michael W. Mahoney; Ananth Grama (SC, 2020)

CKH: Causal Knowledge Hierarchy for Estimating Structural Causal Models from Data and Priors. - Riddhiman Adib; Md Mobasshir Arshed Naved; Chih-Hao Fang; Md. Osman Gani; Ananth Grama; Paul M. Griffin; Sheikh Iqbal Ahamed; Mohammad Adibuzzaman (CoRR, 2022)

CKH: Causal Knowledge Hierarchy for Estimating Structural Causal Models from Data and Priors. - Riddhiman Adib; Md Mobasshir Arshed Naved; Chih-Hao Fang; Md. Osman Gani; Ananth Grama; Paul M. Griffin; Uzma Hasan; Sheikh Iqbal Ahamed; Mohammad Adibuzzaman (COMPSAC, 2025)