Emergence of Multicellular Organisms with Dynamic Differentiation and Spatial Pattern. - Chikara Furusawa; Kunihiko Kaneko (Artif. Life, 1998)

Complex Organization in Multicellularity as a Necessity in EvolutionComplex Organization in Multicellularity as a Necessity in Evolution. - Chikara Furusawa; Kunihiko Kaneko (Artif. Life, 2000)

Emergence of Two Power-Laws in Evolution of Biochemical Network; Embedding Abundance Distribution into Topology. - Chikara Furusawa; Kunihiko Kaneko (BioADIT, 2006)

Analysis of Fluctuation in Gene Expression Based on Continuous Culture System. - Tadashi Yamada; Makoto Sadamitsu; Keisuke Nagahisa; Akiko Kashiwagi; Chikara Furusawa; Tetsuya Yomo; Hiroshi Shimizu (BioADIT, 2006)

Analysis of fluctuation in protein abundance without promoter regulation based on Escherichia coli continuous culture. - Tadashi Yamada; Chikara Furusawa; Keisuke Nagahisa; Akiko Kashiwagi; Tetsuya Yomo; Hiroshi Shimizu (Biosyst., 2007)

A noise-driven mechanism for adaptive growth rate regulation. - Chikara Furusawa; Kunihiko Kaneko; Hiroshi Shimizu (BIONETICS, 2008)

Quantitative expression analysis using oligonucleotide microarrays based on a physico-chemical model. - Naoaki Ono; Shingo Suzuki; Chikara Furusawa; Hiroshi Shimizu; Tetsuya Yomo (BIONETICS, 2008)

Metabolic flux balance analysis of an industrially useful microorganism Corynebacerium glutamicum by a genome-scale reconstructed model. - Hiroshi Shimizu; Yohei Shinfuku; Masahiro Sono; Chikara Furusawa; Takashi Hirasawa (BIONETICS, 2008)

An improved physico-chemical model of hybridization on high-density oligonucleotide microarrays. - Naoaki Ono; Shingo Suzuki; Chikara Furusawa; Tomoharu Agata; Akiko Kashiwagi; Hiroshi Shimizu; Tetsuya Yomo (Bioinform., 2008)

A Generic Mechanism for Adaptive Growth Rate Regulation. - Chikara Furusawa; Kunihiko Kaneko (PLoS Comput. Biol., 2008)

Consistency principle in biological dynamical systems. - Kunihiko Kaneko; Chikara Furusawa (Theory Biosci., 2008)

Model-based analysis of non-specific binding for background correction of high-density oligonucleotide microarrays. - Chikara Furusawa; Naoaki Ono; Shingo Suzuki; Tomoharu Agata; Hiroshi Shimizu; Tetsuya Yomo (Bioinform., 2009)

Analysis of metabolic network based on conservation of molecular structure. - Tomoharu Hogiri; Chikara Furusawa; Yohei Shinfuku; Naoaki Ono; Hiroshi Shimizu (Biosyst., 2009)

Global/temporal gene expression analysis of Escherichia coli in the early stages of symbiotic relationship development with the cellular slime mold Dictyostelium discoideum. - Kumiko Kihara; Kotaro Mori; Shingo Suzuki; Naoaki Ono; Chikara Furusawa; Tetsuya Yomo (Biosyst., 2009)

Analysis of stochasticity in promoter activation by using a dual-fluorescence reporter system. - Jianhong Ou; Chikara Furusawa; Tetsuya Yomo; Hiroshi Shimizu (Biosyst., 2009)

Fluctuation-Driven Adaptation and Symbiosis in Cellular Dynamics. - Chikara Furusawa; Kota Ijichi; Hiroshi Shimizu (BIONETICS, 2010)

An in silico platform for the design of heterologous pathways in nonnative metabolite production. - Sunisa Chatsurachai; Chikara Furusawa; Hiroshi Shimizu (BMC Bioinform., 2012)

FastPros: screening of reaction knockout strategies for metabolic engineering. - Satoshi Ohno; Hiroshi Shimizu; Chikara Furusawa (Bioinform., 2014)

Pluripotency, Differentiation, and Reprogramming: A Gene Expression Dynamics Model with Epigenetic Feedback Regulation. - Tadashi Miyamoto; Chikara Furusawa; Kunihiko Kaneko (PLoS Comput. Biol., 2015)

SCODE: an efficient regulatory network inference algorithm from single-cell RNA-Seq during differentiation. - Hirotaka Matsumoto; Hisanori Kiryu; Chikara Furusawa; Minoru S. H. Ko; Shigeru B. H. Ko; Norio Gouda; Tetsutaro Hayashi; Itoshi Nikaido (Bioinform., 2017)

Metabolic dynamics restricted by conserved carriers: Jamming and feedback. - Tetsuhiro S. Hatakeyama; Chikara Furusawa (PLoS Comput. Biol., 2017)

Rare-event sampling analysis uncovers the fitness landscape of the genetic code. - Yuji Omachi; Nen Saito; Chikara Furusawa (PLoS Comput. Biol., 2023)