Effincient Domination of Permutation Graphs and Trapezoid Graphs. - Y. Daniel Liang; Chin Lung Lu; Chuan Yi Tang (COCOON, 1997)

A Linear-Time Algorithm for the Weighted Feedback Vertex Problem on Interval Graphs. - Chin Lung Lu; Chuan Yi Tang (Inf. Process. Lett., 1997)

Solving the Weighted Efficient Edge Domination Problem on Bipartite Permutation Graphs. - Chin Lung Lu; Chuan Yi Tang (Discret. Appl. Math., 1998)

An Approximate Algorithm for the Weighted Hamiltonian Path Completion Problem on a Tree. - Q. S. Wu; Chin Lung Lu; Richard C. T. Lee (ISAAC, 2000)

A New Measure of Edit Distance between Labeled Trees. - Chin Lung Lu; Zheng-Yao Su; Chuan Yi Tang (COCOON, 2001)

The Full Steiner Tree Problem in Phylogeny. - Chin Lung Lu; Chuan Yi Tang; Richard Chia-Tung Lee (COCOON, 2002)

Constrained Multiple Sequence Alignment Tool Development and Its Application to RNase Family Alignment. - Chuan Yi Tang; Chin Lung Lu; Margaret Dah-Tsyr Chang; Yin-Te Tsai; Yuh-Ju Sun; Kun-Mao Chao; Jia-Ming Chang; Yu-Han Chiou; Chia-Mao Wu; Hao-Teng Chang; Wei-I Chou (CSB, 2002)

Perfect edge domination and efficient edge domination in graphs. - Chin Lung Lu; Ming-Tat Ko; Chuan Yi Tang (Discret. Appl. Math., 2002)

Weighted efficient domination problem on some perfect graphs. - Chin Lung Lu; Chuan Yi Tang (Discret. Appl. Math., 2002)

On the Full and Bottleneck Full Steiner Tree Problems. - Yen Hung Chen; Chin Lung Lu; Chuan Yi Tang (COCOON, 2003)

Constrained Multiple Sequence Alignment Tool Development Andits Application to Rnase Family Alignment. - Chuan Yi Tang; Chin Lung Lu; Margaret Dah-Tsyr Chang; Yin-Te Tsai; Yuh-Ju Sun; Kun-Mao Chao; Jia-Ming Chang; Yu-Han Chiou; Chia-Mao Wu; Hao-Teng Chang; Wei-I Chou (J. Bioinform. Comput. Biol., 2003)

Efficient minus and signed domination in graphs. - Chin Lung Lu; Sheng-Lung Peng; Chuan Yi Tang (Theor. Comput. Sci., 2003)

The full Steiner tree problem. - Chin Lung Lu; Chuan Yi Tang; Richard Chia-Tung Lee (Theor. Comput. Sci., 2003)

MuSiC: a tool for multiple sequence alignment with constraints. - Yin-Te Tsai; Yen Pin Huang; Ching Ta Yu; Chin Lung Lu (Bioinform., 2004)

A heuristic approach for detecting RNA H-type pseudoknots. - Chun-Hsiang Huang; Chin Lung Lu; Hsien-Tai Chiu (Bioinform., 2005)

A memory-efficient algorithm for multiple sequence alignment with constraints. - Chin Lung Lu; Yen Pin Huang (Bioinform., 2005)

ROBIN: a tool for genome rearrangement of block-interchanges. - Chin Lung Lu; Tsui Ching Wang; Ying Chih Lin; Chuan Yi Tang (Bioinform., 2005)

An Efficient Algorithm for Sorting by Block-Interchanges and Its Application to the Evolution of Vibrio Species. - Ying Chih Lin; Chin Lung Lu; Hwan-You Chang; Chuan Yi Tang (J. Comput. Biol., 2005)

The approximability of the weighted Hamiltonian path completion problem on a tree. - Quincy Wu; Chin Lung Lu; Richard Chia-Tung Lee (Theor. Comput. Sci., 2005)

Analysis of circular genome rearrangement by fusions, fissions and block-interchanges. - Chin Lung Lu; Yen-Lin Huang; Tsui Ching Wang; Hsien-Tai Chiu (BMC Bioinform., 2006)

SPRING: a tool for the analysis of genome rearrangement using reversals and block-interchanges. - Ying Chih Lin; Chin Lung Lu; Ying-Chuan Liu; Chuan Yi Tang (Nucleic Acids Res., 2006)

Constrained sequence alignment: A general model and the hardness results. - Yun Sheng Chung; Chin Lung Lu; Chuan Yi Tang (Discret. Appl. Math., 2007)

Efficient algorithms for regular expression constrained sequence alignment. - Yun Sheng Chung; Chin Lung Lu; Chuan Yi Tang (Inf. Process. Lett., 2007)

RE-MuSiC: a tool for multiple sequence alignment with regular expression constraints. - Yun Sheng Chung; Wei-Hsun Lee; Chuan Yi Tang; Chin Lung Lu (Nucleic Acids Res., 2007)

An improved algorithm for finding a length-constrained maximum-density subtree in a tree. - Hsin-Hao Su; Chin Lung Lu; Chuan Yi Tang (Inf. Process. Lett., 2008)

SARSA: a web tool for structural alignment of RNA using a structural alphabet. - Yen-Fu Chang; Yen-Lin Huang; Chin Lung Lu (Nucleic Acids Res., 2008)

OGtree: a tool for creating genome trees of prokaryotes based on overlapping genes. - Li-Wei Jiang; Kuang-Lun Lin; Chin Lung Lu (Nucleic Acids Res., 2008)

Sorting by Transpositions and Reversals (Approximate Ratio 1.5). - Chin Lung Lu (Encyclopedia of Algorithms, 2008)

FASTR3D: a fast and accurate search tool for similar RNA 3D structures. - Chin-En Lai; Ming-Yuan Tsai; Yun-Chen Liu; Chih-Wei Wang; Kun-Tze Chen; Chin Lung Lu (Nucleic Acids Res., 2009)

Reconstructing genome trees of prokaryotes using overlapping genes. - Chih-Hsien Cheng; Chung-Han Yang; Hsien-Tai Chiu; Chin Lung Lu (BMC Bioinform., 2010)

An improved algorithm for sorting by block-interchanges based on permutation groups. - Yen-Lin Huang; Cheng-Chen Huang; Chuan Yi Tang; Chin Lung Lu (Inf. Process. Lett., 2010)

Sorting by Reversals, Generalized Transpositions, and Translocations Using Permutation Groups. - Yen-Lin Huang; Chin Lung Lu (J. Comput. Biol., 2010)

SoRT2: a tool for sorting genomes and reconstructing phylogenetic trees by reversals, generalized transpositions and translocations. - Yen-Lin Huang; Chen-Cheng Huang; Chuan Yi Tang; Chin Lung Lu (Nucleic Acids Res., 2010)

iPARTS: an improved tool of pairwise alignment of RNA tertiary structures. - Chih-Wei Wang; Kun-Tze Chen; Chin Lung Lu (Nucleic Acids Res., 2010)

R3D-BLAST: a search tool for similar RNA 3D substructures. - Yun-Chen Liu; Chung-Han Yang; Kun-Tze Chen; Jyun-Rong Wang; Mei-Ling Cheng; Jen-Chun Chung; Hsien-Tai Chiu; Chin Lung Lu (Nucleic Acids Res., 2011)

An Efficient Algorithm for One-Sided Block Ordering Problem with Block-Interchange Distance. - Kun-Tze Chen; Chi-Long Li; Chung-Han Yang; Chin Lung Lu (COCOON, 2013)

Assembling contigs in draft genomes using reversals and block-interchanges. - Chi-Long Li; Kun-Tze Chen; Chin Lung Lu (BMC Bioinform., 2013)

A new filtration method and a hybrid strategy for approximate string matching. - Chia Wei Lu; Chin Lung Lu; Richard C. T. Lee (Theor. Comput. Sci., 2013)

Prefix Block-Interchanges on Binary Strings. - Shih-Wen Chou; Chung-Han Yang; Kun-Tze Chen; Chin Lung Lu (ICS, 2014)

Approximate String Matching Problem under Non-Overlapping Inversion Distance. - Shih-Yuan Huang; Chung-Han Yang; Toan Thang Ta; Chin Lung Lu (ICS, 2014)

CAR: contig assembly of prokaryotic draft genomes using rearrangements. - Chin Lung Lu; Kun-Tze Chen; Shih-Yuan Huang; Hsien-Tai Chiu (BMC Bioinform., 2014)

A Systematical and Parallel Approach to Solve Problems Involving Special Properties of Bit-Vectors. - Chia Shin Ou; Chin Lung Lu; Richard C. T. Lee (Comput. J., 2015)

An Efficient Algorithm for the Contig Ordering Problem under Algebraic Rearrangement Distance. - Chin Lung Lu (J. Comput. Biol., 2015)

Multi-CAR: a tool of contig scaffolding using multiple references. - Kun-Tze Chen; Cheih-Jung Chen; Hsin-Ting Shen; Chia-Liang Liu; Shang-Hao Huang; Chin Lung Lu (BMC Bioinform., 2016)

An efficient algorithm for computing non-overlapping inversion and transposition distance. - Toan Thang Ta; Cheng-Yao Lin; Chin Lung Lu (Inf. Process. Lett., 2016)

iPARTS2: an improved tool for pairwise alignment of RNA tertiary structures, version 2. - Chung-Han Yang; Cheng-Ting Shih; Kun-Tze Chen; Po-Han Lee; Ping-Han Tsai; Jian-Cheng Lin; Ching-Yu Yen; Tiao-Yin Lin; Chin Lung Lu (Nucleic Acids Res., 2016)

An efficient algorithm for one-sided block ordering problem under block-interchange distance. - Kun-Tze Chen; Chi-Long Li; Hsien-Tai Chiu; Chin Lung Lu (Theor. Comput. Sci., 2016)

Sorting by Transpositions and Reversals (Approximate Ratio 1.5). - Chin Lung Lu (Encyclopedia of Algorithms, 2016)

R3D-BLAST2: an improved search tool for similar RNA 3D substructures. - Ching-Yu Yen; Jian-Cheng Lin; Kun-Tze Chen; Chin Lung Lu (BMC Bioinform., 2017)

CSAR: a contig scaffolding tool using algebraic rearrangements. - Kun-Tze Chen; Chia-Liang Liu; Shang-Hao Huang; Hsin-Ting Shen; Yi-Kung Shieh; Hsien-Tai Chiu; Chin Lung Lu (Bioinform., 2018)

Two-string consensus problem under non-overlapping inversion and transposition distance. - Toan Thang Ta; Cheng-Yao Lin; Chin Lung Lu (Inf. Process. Lett., 2018)

CSAR-web: a web server of contig scaffolding using algebraic rearrangements. - Kun-Tze Chen; Chin Lung Lu (Nucleic Acids Res., 2018)

Clover: a clustering-oriented de novo assembler for Illumina sequences. - Ming-Feng Hsieh; Chin Lung Lu; Chuan Yi Tang (BMC Bioinform., 2020)

The exact multiple pattern matching problem solved by a reference tree approach. - Yi-Kung Shieh; Shyong Jian Shyu; Chin Lung Lu; Richard Chia-Tung Lee (Theor. Comput. Sci., 2021)

Computing a longest common almost-increasing subsequence of two sequences. - Toan Thang Ta; Yi-Kung Shieh; Chin Lung Lu (Theor. Comput. Sci., 2021)

An Integer Linear Programming Approach for Scaffolding Based on Exemplar Breakpoint Distance. - Yi-Kung Shieh; Dao-Yuan Peng; Yu-Han Chen; Tsung-Wei Wu; Chin Lung Lu (J. Comput. Biol., 2022)

Multi-CSAR: a web server for scaffolding contigs using multiple reference genomes. - Shu-Cheng Liu; Yan-Ru Ju; Chin Lung Lu (Nucleic Acids Res., 2022)

A Sparse Dynamic Programming Algorithm for Solving the Coding Sequence Design Problem. - Long-Shang Cho; Kai-Wei Chang; Chin Lung Lu (COCOON (2), 2025)