miRNAMap: genomic maps of microRNA genes and their target genes in mammalian genomes. - Paul Wei-Che Hsu; Hsien-Da Huang; Sheng-Da Hsu; Li-Zen Lin; Ann-Ping Tsou; Ching-Ping Tseng; Peter F. Stadler; Stefan Washietl; Ivo L. Hofacker (Nucleic Acids Res., 2006)

sRNAMap: genomic maps for small non-coding RNAs, their regulators and their targets in microbial genomes. - Hsi-Yuan Huang; Heng-Yi Chang; Chih-Hung Chou; Ching-Ping Tseng; Shinn-Ying Ho; Chi-Dung Yang; Yih-Wei Ju; Hsien-Da Huang (Nucleic Acids Res., 2009)

GeNOSA: inferring and experimentally supporting quantitative gene regulatory networks in prokaryotes. - Yi-Hsiung Chen; Chi-Dung Yang; Ching-Ping Tseng; Hsien-Da Huang; Shinn-Ying Ho (Bioinform., 2015)

Multi-omics profiling reveals microRNA-mediated insulin signaling networks. - Yang-Chi-Dung Lin; Hsi-Yuan Huang; Sirjana Shrestha; Chih-Hung Chou; Yen-Hua Chen; Chi-Ru Chen; Hsiao-Chin Hong; Jing Li; Yi-An Chang; Men-Yee Chiew; Ya-Rong Huang; Siang-Jyun Tu; et al. (BMC Bioinform., 2020)