Assessing key decisions for transcriptomic data integration in biochemical networks. - Anne Richelle; Chintan J. Joshi; Nathan E. Lewis (PLoS Comput. Biol., 2019)

StanDep: Capturing transcriptomic variability improves context-specific metabolic models. - Chintan J. Joshi; Song-Min Schinn; Anne Richelle; Isaac Shamie; Eyleen J. O'Rourke; Nathan E. Lewis (PLoS Comput. Biol., 2020)

What are housekeeping genes? - Chintan J. Joshi; Wenfan Ke; Anna Drangowska-Way; Eyleen J. O'Rourke; Nathan E. Lewis (PLoS Comput. Biol., 2022)

Correction: StanDep: Capturing transcriptomic variability improves context-specific metabolic models. - Chintan J. Joshi; Song-Min Schinn; Anne Richelle; Isaac Shamie; Eyleen J. O'Rourke; Nathan E. Lewis (PLoS Comput. Biol., 2022)

Inferring a spatial code of cell-cell interactions across a whole animal body. - Erick Armingol; Abbas Ghaddar; Chintan J. Joshi; Hratch Baghdassarian; Isaac Shamie; Jason Chan; Hsuan-Lin Her; Samuel Berhanu; Anushka Dar; Fabiola Rodriguez-Armstrong; Olivia Yang; Eyleen J. O'Rourke; et al. (PLoS Comput. Biol., 2022)