Improved pose and affinity predictions using different protocols tailored on the basis of data availability. - Philip Prathipati; Chioko Nagao; Shandar Ahmad; Kenji Mizuguchi (J. Comput. Aided Mol. Des., 2016)

Computational Model To Predict the Fraction of Unbound Drug in the Brain. - Tsuyoshi Esaki; Rikiya Ohashi; Reiko Watanabe; Yayoi Natsume-Kitatani; Hitoshi Kawashima; Chioko Nagao; Kenji Mizuguchi (J. Chem. Inf. Model., 2019)

Attention network for predicting T-cell receptor-peptide binding can associate attention with interpretable protein structural properties. - Kyohei Koyama; Kosuke Hashimoto; Chioko Nagao; Kenji Mizuguchi (Frontiers Bioinform., 2023)