Copy Number Variation detection from 1000 Genomes project exon capture sequencing data. - Jiantao Wu; Krzysztof R. Grzeda; Chip Stewart; Fabian Grubert; Alexander E. Urban; Michael P. Snyder; Gabor T. Marth (BMC Bioinform., 2012)

Scotty: a web tool for designing RNA-Seq experiments to measure differential gene expression. - Michele A. Busby; Chip Stewart; Chase A. Miller; Krzysztof R. Grzeda; Gabor T. Marth (Bioinform., 2013)

Optimizing event selection with the random grid search. - Pushpalatha C. Bhat; Harrison B. Prosper; Sezen Sekmen; Chip Stewart (Comput. Phys. Commun., 2018)

A (fire)cloud-based DNA methylation data preprocessing and quality control platform. - Divy Kangeyan; Andrew J. Dunford; Sowmya Iyer; Chip Stewart; Megan Hanna; Gad Getz; Martin J. Aryee (BMC Bioinform., 2019)

Analyses of non-coding somatic drivers in 2,658 cancer whole genomes. - Esther Rheinbay; Morten Muhlig Nielsen; Federico Abascal; Jeremiah Wala; Ofer Shapira; Grace Tiao; Henrik Hornshøj; Julian M. Hess; Randi Istrup Juul; Ziao Lin; Lars Feuerbach; Radhakrishnan Sabarinathan; et al. (Nat., 2020)