A low-complexity, motion-robust, spatio-temporally adaptive video de-noiser with in-loop noise estimation. - Chirag Jain; Sriram Sethuraman (ICIP, 2008)

A Reliable SVD based Watermarking Schem - Chirag Jain; Siddharth Arora; Prasanta K. Panigrahi (CoRR, 2008)

Fine-grained GPU parallelization of pairwise local sequence alignment. - Chirag Jain; Subodh Kumar 001 (HiPC, 2014)

Efficient detection of viral transmission with threshold-based methods. - Inna Rytsareva; Seth Sims; Sriram P. Chockalingam; Srinivas Aluru; David S. Campo; Cansu Tetik; Sharma V. Thankachan; Yury Khudyakov; Yueli Zheng; Chirag Jain; Amanda Sue (ICCABS, 2015)

A parallel connectivity algorithm for de Bruijn graphs in metagenomic applications. - Patrick Flick; Chirag Jain; Tony Pan; Srinivas Aluru (SC, 2015)

Reliable SVD based Semi-blind and Invisible Watermarking Schemes. - Subhayan Roy Moulick; Siddharth Arora; Chirag Jain; Prasanta K. Panigrahi (CoRR, 2015)

Low cost implementation of a biomimetic approach for UAV health management. - Diego Garcia; Hever Moncayo; Andres E. Perez; Chirag Jain (ACC, 2016)

A Self-Correcting Connected Components Algorithm. - Piyush Sao; Oded Green; Chirag Jain; Richard W. Vuduc (FTXS@HPDC, 2016)

An Adaptive Parallel Algorithm for Computing Connectivity. - Chirag Jain; Patrick Flick; Tony Pan; Oded Green; Srinivas Aluru (CoRR, 2016)

Reprint of "A parallel connectivity algorithm for de Bruijn graphs in metagenomic applications". - Patrick Flick; Chirag Jain; Tony Pan; Srinivas Aluru (Parallel Comput., 2017)

An Adaptive Parallel Algorithm for Computing Connected Components. - Chirag Jain; Patrick Flick; Tony Pan; Oded Green; Srinivas Aluru (IEEE Trans. Parallel Distributed Syst., 2017)

Production Ready Chatbots: Generate if Not Retrieve. - Aniruddha Tammewar; Monik Pamecha; Chirag Jain; Apurva Nagvenkar; Krupal Modi (AAAI Workshops, 2018)

Exploring the importance of context and embeddings in neural NER models for task-oriented dialogue systems. - Pratik Jayarao; Chirag Jain; Aman Srivastava (ICON, 2018)

A fast adaptive algorithm for computing whole-genome homology maps. - Chirag Jain; Sergey Koren; Alexander T. Dilthey; Adam M. Phillippy; Srinivas Aluru (Bioinform., 2018)

A Fast Approximate Algorithm for Mapping Long Reads to Large Reference Databases. - Chirag Jain; Alexander T. Dilthey; Sergey Koren; Srinivas Aluru; Adam M. Phillippy (J. Comput. Biol., 2018)

Accelerating Sequence Alignment to Graphs. - Chirag Jain; Sanchit Misra; Haowen Zhang; Alexander T. Dilthey; Srinivas Aluru (IPDPS, 2019)

Validating Paired-End Read Alignments in Sequence Graphs. - Chirag Jain; Haowen Zhang; Alexander T. Dilthey; Srinivas Aluru (WABI, 2019)

Kmerind: A Flexible Parallel Library for K-mer Indexing of Biological Sequences on Distributed Memory Systems. - Tony Pan; Patrick Flick; Chirag Jain; Yongchao Liu; Srinivas Aluru (IEEE ACM Trans. Comput. Biol. Bioinform., 2019)

Long Read Mapping at Scale: Algorithms and Applications. - Chirag Jain (2019)

HINT3: Raising the bar for Intent Detection in the Wild. - Gaurav Arora; Chirag Jain; Manas Chaturvedi; Krupal Modi (Insights, 2020)

Duplicate Instance Identification In Multiview And Multiscale Systems. - Adrita Barari; Rajat Katiyar; Payanshi Jain; Juhi Srivastava; N. V. S. Abhilash; Ankit Sati; Chirag Jain; Ghulam Mohiuddin Khan (BigMM, 2020)

It's Not What They Play, It's What You Hear: Understanding Perceived vs. Induced Emotions in Hindustani Classical Music. - Amogh Gulati; Brihi Joshi; Chirag Jain; Jainendra Shukla (ICMI Companion, 2020)

Weighted minimizer sampling improves long read mapping. - Chirag Jain; Arang Rhie; Haowen Zhang; Claudia Chu; Brian Walenz; Sergey Koren; Adam M. Phillippy (Bioinform., 2020)

On the Complexity of Sequence-to-Graph Alignment. - Chirag Jain; Haowen Zhang; Yu Gao 001; Srinivas Aluru (J. Comput. Biol., 2020)

What's kooking?: characterizing India's emerging social network, Koo. - Asmit Kumar Singh; Chirag Jain; Jivitesh Jain; Rishi Raj Jain; Shradha Sehgal; Tanisha Pandey; Ponnurangam Kumaraguru (ASONAM, 2021)

LSB Based Audio Steganography using RSA and ChaCha20 Encryption. - Pravesh Ganwani; Luv Gupta; Chirag Jain; Rucha Kulkarni; Sheetal Chaudhari (ICCCNT, 2021)

A variant selection framework for genome graphs. - Chirag Jain; Neda Tavakoli; Srinivas Aluru (Bioinform., 2021)

Real-time mapping of nanopore raw signals. - Haowen Zhang; Haoran Li; Chirag Jain; Haoyu Cheng; Kin Fai Au; Heng Li 002; Srinivas Aluru (Bioinform., 2021)

Koo: The new King? Characterizing India's Emerging Social Network. - Asmit Kumar Singh; Chirag Jain; Jivitesh Jain; Rishi Raj Jain; Shradha Sehgal; Ponnurangam Kumaraguru (CoRR, 2021)

Co-linear Chaining with Overlaps and Gap Costs. - Chirag Jain; Daniel Gibney; Sharma V. Thankachan (RECOMB, 2022)

A novel approach to retrieve unlabelled images. - Ashish Pahwa; Deepali Kamthania; Aayush Gupta; Chirag Jain (Int. J. Bus. Intell. Data Min., 2022)

Algorithms for Colinear Chaining with Overlaps and Gap Costs. - Chirag Jain; Daniel Gibney; Sharma V. Thankachan (J. Comput. Biol., 2022)

Accelerating minimap2 for long-read sequencing applications on modern CPUs. - Saurabh Kalikar; Chirag Jain; Md. Vasimuddin; Sanchit Misra (Nat. Comput. Sci., 2022)

Securing E-Voting using Hyperledger Fabric: A Permissioned Blockchain Approach. - Chirag Jain; Luv Gupta; Manav Ranawat; Varsha Hole (OCIT, 2023)

A Lossless Compression Pipeline for Petabyte-Scale Whole Genome Sequencing Data. - Ajeya Bhat; Sai Manasa Chadalavada; Nagakishore Jammula; Chirag Jain; Yogesh Simmhan (HiPC, 2023)

Automated Identification of Security and Privacy Requirements from Software Engineering Contracts. - Chirag Jain; Preethu Rose Anish; Smita Ghaisas (REW, 2023)

A Transformer-based Approach for Abstractive Summarization of Requirements from Obligations in Software Engineering Contracts. - Chirag Jain; Preethu Rose Anish; Amrita Singh; Smita Ghaisas (RE, 2023)

Sequence to Graph Alignment Using Gap-Sensitive Co-linear Chaining. - Ghanshyam Chandra; Chirag Jain (RECOMB, 2023)

Coverage-preserving sparsification of overlap graphs for long-read assembly. - Chirag Jain (Bioinform., 2023)

Gap-Sensitive Colinear Chaining Algorithms for Acyclic Pangenome Graphs. - Ghanshyam Chandra; Chirag Jain (J. Comput. Biol., 2023)

Generating Clarification Questions for Disambiguating Contracts. - Anmol Singhal; Chirag Jain; Preethu Rose Anish; Arkajyoti Chakraborty; Smita Ghaisas (LREC/COLING, 2024)

Refining App Reviews: Dataset, Methodology, and Evaluation. - Amrita Singh; Chirag Jain; Mohit Chaudhary; Preethu Anish (EMNLP (Industry Track), 2024)

DRAWBOT: Making Everyday Objects Interactive. - Chirag Jain; Hunter L. Brown; Heather Knight (HRI (Companion), 2024)

RAG Beyond Text: Enhancing Image Retrieval in RAG Systems. - Sukanya Bag; Ayushman Gupta; Rajat Kaushik; Chirag Jain (ICECET, 2024)

Evaluating Modern Information Extraction Techniques for Complex Document Structures. - Harichandana Gonuguntla; Kurra Meghana; Thode Sai Prajwal; Koundinya N. V. S. S; Kolli Nethre Sai; Chirag Jain (ICECET, 2024)

Harnessing Multimodal AI for Creative Design: Performance Evaluation of Stable Diffusion and DALL-E 3 in Fashion Apparel and Typography. - Kolli Nethre Sai; Upamanyu Wable; Ayush Singh; Koundinya N. V. S. S; Harichandana Gonuguntla; Chirag Jain (ICECET, 2024)

On the Coverage Required for Diploid Genome Assembly. - Daanish Mahajan; Chirag Jain; Navin Kashyap (ISIT, 2024)

Haplotype-Aware Sequence Alignment to Pangenome Graphs. - Ghanshyam Chandra; Daniel Gibney; Chirag Jain (RECOMB, 2024)

A Semi-automated Multi-robot Comedy Performance System with Gesture. - Janani Swaminathan; Chirag Jain; Madison Miller; Heather Knight (ICSR + AI (2), 2024)

Co-linear chaining on pangenome graphs. - Jyotshna Rajput; Ghanshyam Chandra; Chirag Jain (Algorithms Mol. Biol., 2024)

Integer Programming Framework for Pangenome-Based Genome Inference. - Ghanshyam Chandra; Md. Helal Hossen; Stephan Scholz; Alexander T. Dilthey; Daniel Gibney; Chirag Jain (RECOMB, 2025)

Haplotype-Aware Long-Read Error Correction. - Parvesh Barak; Daniel Gibney; Chirag Jain (WABI, 2025)

Exploring Zero-Shot App Review Classification with ChatGPT: Challenges and Potential. - Mohit Chaudhary; Chirag Jain; Preethu Rose Anish (CoRR, 2025)