Coregulation of transcription factors and microRNAs in human transcriptional regulatory network. - Cho-Yi Chen; Shui-Tein Chen; Chiou-Shann Fuh; Hsueh-Fen Juan; Hsuan-Cheng Huang (BMC Bioinform., 2011)

Lengthening of 3′UTR increases with morphological complexity in animal evolution. - Cho-Yi Chen; Shui-Tein Chen; Hsueh-Fen Juan; Hsuan-Cheng Huang (Bioinform., 2012)

Crosstalk between transcription factors and microRNAs in human protein interaction network. - Chen-Ching Lin; Ya-Jen Chen; Cho-Yi Chen; Yen-Jen Oyang; Hsueh-Fen Juan; Hsuan-Cheng Huang (BMC Syst. Biol., 2012)

MetaDCN: meta-analysis framework for differential co-expression network detection with an application in breast cancer. - Li Zhu; Ying Ding; Cho-Yi Chen; Lin Wang; Zhiguang Huo (Bioinform., 2017)

Tissue-aware RNA-Seq processing and normalization for heterogeneous and sparse data. - Joseph N. Paulson; Cho-Yi Chen; Camila Miranda Lopes-Ramos; Marieke L. Kuijjer; John Platig; Abhijeet R. Sonawane; Maud Fagny; Kimberly Glass; John Quackenbush (BMC Bioinform., 2017)

Phylotranscriptomic patterns of network stochasticity and pathway dynamics during embryogenesis. - Kuei-Yueh Ko; Cho-Yi Chen; Hsueh-Fen Juan; Hsuan-Cheng Huang (Bioinform., 2022)