Estimating brain microvascular blood flows from partial two-photon microscopy data by computation with a circuit model. - John Sunwoo; Nathan R. Cornelius; Peter C. Doerschuk; Chris B. Schaffer (EMBC, 2011)

Deep convolutional neural networks for segmenting 3D in vivo multiphoton images of vasculature in Alzheimer disease mouse models. - Mohammad Haft-Javaherian; Linjing Fang; Victorine P. Muse; Chris B. Schaffer; Nozomi Nishimura; Mert R. Sabuncu (CoRR, 2018)

A topological encoding convolutional neural network for segmentation of 3D multiphoton images of brain vasculature using persistent homology. - Mohammad Haft-Javaherian; Martin Villiger; Chris B. Schaffer; Nozomi Nishimura; Polina Golland; Brett E. Bouma (CVPR Workshops, 2020)