The helix-hairpin-helix DNA-binding motif: a structural basis for non- sequence-specific recognition of DNA. - Aidan J. Doherty; Louise C. Serpell; Chris P. Ponting (Nucleic Acids Res., 1996)

IMPALA: matching a protein sequence against a collection of PSI-BLAST-constructed position-specific score matrices. - Alejandro A. Schäffer; Yuri I. Wolf; Chris P. Ponting; Eugene V. Koonin; L. Aravind; Stephen F. Altschul (Bioinform., 1999)

SMART: identification and annotation of domains from signalling and extracellular protein sequences. - Chris P. Ponting; Jörg Schultz; Frank Milpetz; Peer Bork (Nucleic Acids Res., 1999)

SMART: a web-based tool for the study of genetically mobile domains. - Jörg Schultz; Richard R. Copley; Tobias Doerks; Chris P. Ponting; Peer Bork (Nucleic Acids Res., 2000)

Issues in Predicting Protein Function From Sequence. - Chris P. Ponting (Briefings Bioinform., 2001)

CHROMA: consensus-based colouring of multiple alignments for publication. - Leo Goodstadt; Chris P. Ponting (Bioinform., 2001)

InterPro: An Integrated Documentation Resource for Protein Families, Domains and Functional Sites - Nicola J. Mulder; Rolf Apweiler; Terri K. Attwood; Amos Bairoch; Alex Bateman; David Binns; Margaret Biswas; Paul Bradley; Peer Bork; Philipp Bucher; Richard R. Copley; Emmanuel Courcelle; et al. (Briefings Bioinform., 2002)

Recent improvements to the SMART domain-based sequence annotation resource. - Ivica Letunic; Leo Goodstadt; Nicholas J. Dickens; Tobias Doerks; Jörg Schultz; Richard Mott; Francesca D. Ciccarelli; Richard R. Copley; Chris P. Ponting; Peer Bork (Nucleic Acids Res., 2002)

The InterPro Database, 2003 brings increased coverage and new features. - Nicola J. Mulder; Rolf Apweiler; Terri K. Attwood; Amos Bairoch; Daniel Barrell; Alex Bateman; David Binns; Margaret Biswas; Paul Bradley; Peer Bork; Philipp Bucher; Richard R. Copley; et al. (Nucleic Acids Res., 2003)

SMART 4.0: towards genomic data integration. - Ivica Letunic; Richard R. Copley; Steffen Schmidt; Francesca D. Ciccarelli; Tobias Doerks; Jörg Schultz; Chris P. Ponting; Peer Bork (Nucleic Acids Res., 2004)

InterPro, progress and status in 2005. - Nicola J. Mulder; Rolf Apweiler; Teresa K. Attwood; Amos Bairoch; Alex Bateman; David Binns; Paul Bradley; Peer Bork; Phillip Bucher; Lorenzo Cerutti; Richard R. Copley; Emmanuel Courcelle; et al. (Nucleic Acids Res., 2005)

Meisetz and the birth of the KRAB motif. - Zoë Birtle; Chris P. Ponting (Bioinform., 2006)

A novel domain suggests a ciliary function for ASPM, a brain size determining gene. - Chris P. Ponting (Bioinform., 2006)

Phylogenetic Reconstruction of Orthology, Paralogy, and Conserved Synteny for Dog and Human. - Leo Goodstadt; Chris P. Ponting (PLoS Comput. Biol., 2006)

Genome-Wide Identification of Human Functional DNA Using a Neutral Indel Model. - Gerton Lunter; Chris P. Ponting; Jotun Hein (PLoS Comput. Biol., 2006)

OPTIC: orthologous and paralogous transcripts in clades. - Andreas Heger; Chris P. Ponting (Nucleic Acids Res., 2008)

Accurate Distinction of Pathogenic from Benign CNVs in Mental Retardation. - Jayne Y. Hehir-Kwa; Nienke Wieskamp; Caleb Webber; Rolph Pfundt; Han G. Brunner; Christian Gilissen; Bert B. A. de Vries; Chris P. Ponting; Joris A. Veltman (PLoS Comput. Biol., 2010)

Cdc45: the missing RecJ ortholog in eukaryotes? - Luis Sánchez-Pulido; Chris P. Ponting (Bioinform., 2011)

A common ancestry for BAP1 and Uch37 regulators. - Luis Sánchez-Pulido; Lesheng Kong; Chris P. Ponting (Bioinform., 2012)

GAT: a simulation framework for testing the association of genomic intervals. - Andreas Heger; Caleb Webber; Martin Goodson; Chris P. Ponting; Gerton Lunter (Bioinform., 2013)

Tiki, at the head of a new superfamily of enzymes. - Luis Sánchez-Pulido; Chris P. Ponting (Bioinform., 2013)

CGAT: computational genomics analysis toolkit. - David Sims; Nicholas E. Ilott; Stephen N. Sansom; Ian M. Sudbery; Jethro S. Johnson; Katherine A. Fawcett; Antonio J. Berlanga-Taylor; Sebastian Luna-Valero; Chris P. Ponting; Andreas Heger (Bioinform., 2014)

Vasohibins: new transglutaminase-like cysteine proteases possessing a non-canonical Cys-His-Ser catalytic triad. - Luis Sánchez-Pulido; Chris P. Ponting (Bioinform., 2016)

TMEM132: an ancient architecture of cohesin and immunoglobulin domains define a new family of neural adhesion molecules. - Luis Sánchez-Pulido; Chris P. Ponting (Bioinform., 2018)

Hexa-Longin domain scaffolds for inter-Rab signalling. - Luis Sánchez-Pulido; Chris P. Ponting (Bioinform., 2020)