QTL Express: mapping quantitative trait loci in simple and complex pedigrees. - George Seaton; Chris S. Haley; Sara A. Knott; Mike Kearsey; Peter M. Visscher (Bioinform., 2002)

Methodological aspects of the genetic dissection of gene expression. - Örjan Carlborg; D. J. De Koning; Kenneth F. Manly; Elissa J. Chesler; Robert W. Williams; Chris S. Haley (Bioinform., 2005)

EpiGPU: exhaustive pairwise epistasis scans parallelized on consumer level graphics cards. - Gibran Hemani; Athanasios Theocharidis; Wenhua Wei; Chris S. Haley (Bioinform., 2011)

High-throughput analysis of epistasis in genome-wide association studies with BiForce. - Attila Gyenesei; Jonathan Moody; Colin A. M. Semple; Chris S. Haley; Wenhua Wei (Bioinform., 2012)

BiForce Toolbox: powerful high-throughput computational analysis of gene-gene interactions in genome-wide association studies. - Attila Gyenesei; Jonathan Moody; Asta Laiho; Colin A. M. Semple; Chris S. Haley; Wenhua Wei (Nucleic Acids Res., 2012)

Corrigendum of 'High throughput analysis of epistasis in genome-wide association studies with BiForce'. - Attila Gyenesei; Colin A. M. Semple; Chris S. Haley; Wenhua Wei (Bioinform., 2013)

Shared activity patterns arising at genetic susceptibility loci reveal underlying genomic and cellular architecture of human disease. - J. Kenneth Baillie; Andrew Bretherick; Christopher S. Haley; Sara Clohisey; Alan Gray; Lucile P. A. Neyton; Jeffrey Barrett; Eli A. Stahl; Albert Tenesa; Robin Andersson; J. Ben Brown; Geoffrey J. Faulkner; et al. (PLoS Comput. Biol., 2018)