matchms - processing and similarity evaluation of mass spectrometry data. - Florian Huber; Stefan Verhoeven; Christiaan Meijer; Hanno Spreeuw; Efraín Castilla; Cunliang Geng; Justin J. J. van der Hooft; Simon Rogers; Adam Belloum; Faruk Diblen; Jurriaan H. Spaaks (J. Open Source Softw., 2020)

Mcfly: Automated deep learning on time series. - Dafne E. van Kuppevelt; Christiaan Meijer; Florian Huber; A. van der Ploeg; S. Georgievska; Vincent T. van Hees (SoftwareX, 2020)

Laserchicken - A tool for distributed feature calculation from massive LiDAR point cloud datasets. - Christiaan Meijer; Meiert W. Grootes; Zsófia Koma; Yifat Dzigan; R. Gonçalves; B. Andela; G. van den Oord; Elena Ranguelova; Nicolas Renaud; W. Daniel Kissling (SoftwareX, 2020)

Deep learning for supervised classification of temporal data in ecology. - César Capinha; Ana Ceia-Hasse; Andrew M. Kramer; Christiaan Meijer (Ecol. Informatics, 2021)

Laserfarm - A high-throughput workflow for generating geospatial data products of ecosystem structure from airborne laser scanning point clouds. - W. Daniel Kissling; Yifang Shi; Zsófia Koma; Christiaan Meijer; Ou Ku; Francesco Nattino; Arie C. Seijmonsbergen; Meiert W. Grootes (Ecol. Informatics, 2022)

DIANNA: Deep Insight And Neural Network Analysis. - Elena Ranguelova; Christiaan Meijer; Leon C. Oostrum; Yang Liu 304; Patrick Bos; Giulia Crocioni; Matthieu Laneuville; Bryan Cardenas Guevara; Rena Bakhshi; Damian Podareanu (J. Open Source Softw., 2022)

Computational Identification of Regulatory Statements in EU Legislation. - Gijs Jan Brandsma; Jens Blom-Hansen; Christiaan Meijer; Kody Moodley (CoRR, 2025)

Explainable embeddings with Distance Explainer. - Christiaan Meijer; E. G. Patrick Bos (CoRR, 2025)