Automatic Extraction of Biological Information from Scientific Text: Protein-Protein Interactions. - Christian Blaschke; Miguel A. Andrade; Christos A. Ouzounis; Alfonso Valencia (ISMB, 1999)

Information extraction in molecular biology. - Christian Blaschke; Lynette Hirschman; Alfonso Valencia (Briefings Bioinform., 2002)

The Frame-Based Module of the SUISEKI Information Extraction System. - Christian Blaschke; Alfonso Valencia (IEEE Intell. Syst., 2002)

Evaluation of annotation strategies using an entire genome sequence. - Ioannis Iliopoulos; Sophia Tsoka; Miguel A. Andrade; Anton J. Enright; Mark Carroll; Patrick Poullet; Vasilis J. Promponas; Theodore Liakopoulos; Giorgos Palaios; Claude Pasquier; Stavros J. Hamodrakas; Javier Tamames; et al. (Bioinform., 2003)

Assessing the Correlation between Contextual Patterns and Biological Entity Tagging. - Martin Krallinger; Maria Padron; Christian Blaschke; Alfonso Valencia (NLPBA/BioNLP, 2004)

Do you do text? - Christian Blaschke; Alexander S. Yeh; Evelyn Camon; Marc E. Colosimo; Rolf Apweiler; Lynette Hirschman; Alfonso Valencia (Bioinform., 2005)

Evaluation of BioCreAtIvE assessment of task 2. - Christian Blaschke; Eduardo Andrés León; Martin Krallinger; Alfonso Valencia (BMC Bioinform., 2005)

Overview of BioCreAtIvE: critical assessment of information extraction for biology. - Lynette Hirschman; Alexander S. Yeh; Christian Blaschke; Alfonso Valencia (BMC Bioinform., 2005)

Flexible Text Mining Strategies for Drug Discovery. - David Milward; Christian Blaschke; Jean-Marc Neefs; Mark-Christoph Ott; Rudi Verbeeck; Andrew Stubbs (SMBM, 2006)

BABELOMICS: a systems biology perspective in the functional annotation of genome-scale experiments. - Fátima Al-Shahrour; Pablo Minguez; Joaquín Tárraga; David Montaner; Eva Alloza; Juan M. Vaquerizas; Lucía Conde; Christian Blaschke; Javier Vera; Joaquín Dopazo (Nucleic Acids Res., 2006)

Identifying bioentity recognition errors of rule-based text-mining systems. - Francisco M. Couto; Tiago Grego; Hugo P. Bastos; Catia Pesquita; Rafael P. Torres; Pablo Sanchez; Leandro Pascual; Christian Blaschke (ICDIM, 2008)

Overview of the Ninth Annual Meeting of the BioLINK SIG at ISMB: Linking Literature, Information and Knowledge for Biology. - Christian Blaschke; Lynette Hirschman; Hagit Shatkay; Alfonso Valencia (BioLINK@ISMB/ECCB, 2008)

Building Enterprise Ready Applications Using Linked Open Data. - Amar-Djalil Mezaour; Bert Van Nuffelen; Christian Blaschke (Linked Open Data, 2014)

Summary of the BioLINK SIG 2013 meeting at ISMB/ECCB 2013. - Karin Verspoor; Hagit Shatkay; Lynette Hirschman; Christian Blaschke; Alfonso Valencia (Bioinform., 2015)

Question Formulation and Question Answering for Knowledge Graph Completion. - Maria Khvalchik; Christian Blaschke; Artem Revenko (DEXA Workshops, 2019)

Question Answering for Link Prediction and Verification. - Maria Khvalchik; Artem Revenko; Christian Blaschke (ESWC (Satellite Events), 2019)

Training NER Models: Knowledge Graphs in the Loop. - Sotirios Karampatakis; Alexis Dimitriadis; Artem Revenko; Christian Blaschke (ESWC (Satellite Events), 2020)