3-D Density Kernel Estimation for Counting in Microscopy Image Volumes Using 3-D Image Filters and Random Decision Trees. - Dominic Waithe; Martin Hailstone; Mukesh Kumar Lalwani; Richard M. Parton; Lu Yang; Roger Patient; Christian Eggeling; Ilan Davis (ECCV Workshops (1), 2016)

FoCuS-point: software for STED fluorescence correlation and time-gated single photon counting. - Dominic Waithe; Mathias P. Clausen; Erdinc Sezgin; Christian Eggeling (Bioinform., 2016)

Spectral imaging toolbox: segmentation, hyperstack reconstruction, and batch processing of spectral images for the determination of cell and model membrane lipid order. - Miles Aron; Richard J. Browning; Dario Carugo; Erdinc Sezgin; Jorge Bernardino de la Serna; Christian Eggeling; Eleanor Stride (BMC Bioinform., 2017)

TRAIT2D: a Software for Quantitative Analysis of Single Particle Diffusion Data. - Francesco Reina; John M. A. Wigg; Mariia Dmitrieva; Joël Lefebvre; Jens Rittscher; Christian Eggeling (F1000Research, 2021)

Blob-B-Gone: a lightweight framework for removing blob artifacts from 2D/3D MINFLUX single-particle tracking data. - Bela T. L. Vogler; Francesco Reina; Christian Eggeling (Frontiers Bioinform., 2023)