Discovering Biomarkers for Myocardial Infarction from SELDI-TOF Spectra. - Christian Höner zu Siederdissen; Susanne Ragg; Sven Rahmann (GfKl, 2006)

Discriminatory power of RNA family models. - Christian Höner zu Siederdissen; Ivo L. Hofacker (Bioinform., 2010)

ViennaRNA Package 2.0. - Ronny Lorenz; Stephan H. Bernhart; Christian Höner zu Siederdissen; Hakim Tafer; Christoph Flamm; Peter F. Stadler; Ivo L. Hofacker (Algorithms Mol. Biol., 2011)

A folding algorithm for extended RNA secondary structures. - Christian Höner zu Siederdissen; Stephan H. Bernhart; Peter F. Stadler; Ivo L. Hofacker (Bioinform., 2011)

Semantics and Ambiguity of Stochastic RNA Family Models. - Robert Giegerich; Christian Höner zu Siederdissen (IEEE ACM Trans. Comput. Biol. Bioinform., 2011)

Sneaking around concatMap: efficient combinators for dynamic programming. - Christian Höner zu Siederdissen (ICFP, 2012)

RNA Folding Algorithms with G-Quadruplexes. - Ronny Lorenz; Stephan H. Bernhart; Fabian Externbrink; Jing Qin 006; Christian Höner zu Siederdissen; Fabian Amman; Ivo L. Hofacker; Peter F. Stadler (BSB, 2012)

How to Multiply Dynamic Programming Algorithms. - Christian Höner zu Siederdissen; Ivo L. Hofacker; Peter F. Stadler (BSB, 2013)

CMCompare webserver: comparing RNA families via covariance models. - Florian Eggenhofer; Ivo L. Hofacker; Christian Höner zu Siederdissen (Nucleic Acids Res., 2013)

2D Meets 4G: G-Quadruplexes in RNA Secondary Structure Prediction. - Ronny Lorenz; Stephan H. Bernhart; Jing Qin 006; Christian Höner zu Siederdissen; Andrea Tanzer; Fabian Amman; Ivo L. Hofacker; Peter F. Stadler (IEEE ACM Trans. Comput. Biol. Bioinform., 2013)

Comparative Detection of Processed Small RNAs in Archaea. - Christian Höner zu Siederdissen; Sarah Berkemer; Fabian Amman; Axel Wintsche; Sebastian Will; Sonja J. Prohaska; Peter F. Stadler (IWBBIO, 2014)

The HERMIT in the stream: fusing stream fusion's concatMap. - Andrew Farmer; Christian Höner zu Siederdissen; Andy Gill (PEPM, 2014)

Dynamic Programming for Set Data Types. - Christian Höner zu Siederdissen; Sonja J. Prohaska; Peter F. Stadler (BSB, 2014)

Product Grammars for Alignment and Folding. - Christian Höner zu Siederdissen; Ivo L. Hofacker; Peter F. Stadler (IEEE ACM Trans. Comput. Biol. Bioinform., 2015)

Algebraic Dynamic Programming over general data structures. - Christian Höner zu Siederdissen; Sonja J. Prohaska; Peter F. Stadler (BMC Bioinform., 2015)

Algebraic dynamic programming for multiple context-free grammars. - Maik Riechert; Christian Höner zu Siederdissen; Peter F. Stadler (Theor. Comput. Sci., 2016)

Algebraic Dynamic Programming on Trees. - Sarah Berkemer; Christian Höner zu Siederdissen; Peter F. Stadler (Algorithms, 2017)

Partially local three-way alignments and the sequence signatures of mitochondrial genome rearrangements. - Marwa Al Arab; Matthias Bernt; Christian Höner zu Siederdissen; Kifah Tout; Peter F. Stadler (Algorithms Mol. Biol., 2017)

Coordinate systems for supergenomes. - Fabian Gärtner; Christian Höner zu Siederdissen; Lydia Müller; Peter F. Stadler (Algorithms Mol. Biol., 2018)

CMV: visualization for RNA and protein family models and their comparisons. - Florian Eggenhofer; Ivo L. Hofacker; Rolf Backofen; Christian Höner zu Siederdissen (Bioinform., 2018)

Alignments as Compositional Structures. - Sarah J. Berkemer; Christian Höner zu Siederdissen; Peter F. Stadler (CoRR, 2018)

SSS-test: a novel test for detecting positive selection on RNA secondary structure. - Maria Beatriz Walter Costa; Christian Höner zu Siederdissen; Marko Dunjic; Peter F. Stadler; Katja Nowick (BMC Bioinform., 2019)

flowEMMi: an automated model-based clustering tool for microbial cytometric data. - Joachim Ludwig; Christian Höner zu Siederdissen; Zishu Liu; Peter F. Stadler; Susann Müller (BMC Bioinform., 2019)

Compositional Properties of Alignments. - Sarah J. Berkemer; Christian Höner zu Siederdissen; Peter F. Stadler (Math. Comput. Sci., 2021)

Superbubbles as an empirical characteristic of directed networks. - Fabian Gärtner; Felix Kühnl; Carsten R. Seemann; Christian Höner zu Siederdissen; Peter F. Stadler (Netw. Sci., 2021)

Accuracy of RNA Structure Prediction Depends on the Pseudoknot Grammar. - Dustyn Eggers; Christian Höner zu Siederdissen; Peter F. Stadler (BSB, 2022)