CUDA-Accelerated Alignment of Subsequences in Streamed Time Series Data. - Christian Hundt 002; Bertil Schmidt; Elmar Schömer (ICPP, 2014)

GEM: an elastic and translation-invariant similarity measure with automatic trend adjustment. - Christian Hundt 002; Bertil Schmidt; Elmar Schömer; Herbert Göttler; Hoang-Vu Dang (SAC, 2014)

SAUCE: A Web-Based Automated Assessment Tool for Teaching Parallel Programming. - Moritz Schlarb; Christian Hundt 002; Bertil Schmidt (Euro-Par Workshops, 2015)

Efficient subsequence alignment of time series. - Christian Hundt 002 (2015)

Ultra-Fast Detection of Higher-Order Epistatic Interactions on GPUs. - Daniel Jünger; Christian Hundt 002; Jorge González-Domínguez; Bertil Schmidt (Euro-Par Workshops, 2016)

rapidGSEA: Speeding up gene set enrichment analysis on multi-core CPUs and CUDA-enabled GPUs. - Christian Hundt 002; Andreas Hildebrandt 001; Bertil Schmidt (BMC Bioinform., 2016)

S-Aligner: Ultrascalable Read Mapping on Sunway Taihu Light. - Xiaohui Duan; Kai Xu; Yuandong Chan; Christian Hundt 002; Bertil Schmidt; Pavan Balaji; Weiguo Liu (CLUSTER, 2017)

MetaCache: context-aware classification of metagenomic reads using minhashing. - André Müller; Christian Hundt 002; Andreas Hildebrandt 001; Thomas Hankeln; Bertil Schmidt (Bioinform., 2017)

Accelerating metagenomic read classification on CUDA-enabled GPUs. - Robin Kobus; Christian Hundt 002; André Müller; Bertil Schmidt (BMC Bioinform., 2017)

Speed and accuracy improvement of higher-order epistasis detection on CUDA-enabled GPUs. - Daniel Jünger; Christian Hundt 002; Jorge González-Domínguez; Bertil Schmidt (Clust. Comput., 2017)

$ν$-net: Deep Learning for Generalized Biventricular Cardiac Mass and Function Parameters. - Hinrich B. Winther; Christian Hundt 002; Bertil Schmidt; Christoph Czerner; Johann Bauersachs; Frank K. Wacker; Jens Vogel-Claussen (CoRR, 2017)

SAUCE: A web application for interactive teaching and learning of parallel programming. - Christian Hundt 002; Moritz Schlarb; Bertil Schmidt (J. Parallel Distributed Comput., 2017)

cuBool: Bit-Parallel Boolean Matrix Factorization on CUDA-Enabled Accelerators. - Robin Kobus; Adrian Lamoth; André Müller; Christian Hundt 002; Stefan Kramer 001; Bertil Schmidt (ICPADS, 2018)

WarpDrive: Massively Parallel Hashing on Multi-GPU Nodes. - Daniel Jünger; Christian Hundt 002; Bertil Schmidt (IPDPS, 2018)

parSRA: A framework for the parallel execution of short read aligners on compute clusters. - Jorge González-Domínguez; Christian Hundt 002; Bertil Schmidt (J. Comput. Sci., 2018)

Suffix Array Construction on Multi-GPU Systems. - Florian Büren; Daniel Jünger; Robin Kobus; Christian Hundt 002; Bertil Schmidt (HPDC, 2019)

Gossip: Efficient Communication Primitives for Multi-GPU Systems. - Robin Kobus; Daniel Jünger; Christian Hundt 002; Bertil Schmidt (ICPP, 2019)

Massively parallel computation of atmospheric neutrino oscillations on CUDA-enabled accelerators. - Felix Kallenborn; Christian Hundt 002; Sebastian Böser; Bertil Schmidt (Comput. Phys. Commun., 2019)

Leveraging Privileged Information to Limit Distraction in End-to-End Lane Following. - François Robinet; Antoine Demeules; Raphaël Frank; Georgios Varisteas; Christian Hundt 002 (CCNC, 2020)

cuDTW++: Ultra-Fast Dynamic Time Warping on CUDA-Enabled GPUs. - Bertil Schmidt; Christian Hundt 002 (Euro-Par, 2020)

WarpCore: A Library for fast Hash Tables on GPUs. - Daniel Jünger; Robin Kobus; André Müller; Christian Hundt 002; Kai Xu; Weiguo Liu; Bertil Schmidt (HiPC, 2020)

Evolving a Deep Neural Network Training Time Estimator. - Frédéric Pinel; Jianxiong Yin; Christian Hundt 002; Emmanuel Kieffer; Sébastien Varrette; Pascal Bouvry; Simon See (OLA, 2020)

FeatherCNN: Fast Inference Computation with TensorGEMM on ARM Architectures. - Haidong Lan; Jintao Meng 001; Christian Hundt 002; Bertil Schmidt; Minwen Deng; Xiaoning Wang; Weiguo Liu; Yu Qiao 001; Shengzhong Feng (IEEE Trans. Parallel Distributed Syst., 2020)

MetaCache-GPU: Ultra-Fast Metagenomic Classification. - Robin Kobus; André Müller; Daniel Jünger; Christian Hundt 002; Bertil Schmidt (ICPP, 2021)

Weakly-Supervised Free Space Estimation through Stochastic Co-Teaching. - François Robinet; Claudia Parera; Christian Hundt 002; Raphaël Frank (WACV (Workshops), 2022)

General-purpose GPU hashing data structures and their application in accelerated genomics. - Daniel Jünger; Robin Kobus; André Müller; Christian Hundt 002; Kai Xu; Weiguo Liu; Bertil Schmidt (J. Parallel Distributed Comput., 2022)

Spherical Fourier Neural Operators: Learning Stable Dynamics on the Sphere. - Boris Bonev; Thorsten Kurth; Christian Hundt 002; Jaideep Pathak; Maximilian Baust; Karthik Kashinath; Anima Anandkumar (ICML, 2023)

Geometry-Informed Neural Operator for Large-Scale 3D PDEs. - Zongyi Li; Nikola B. Kovachki; Christopher B. Choy; Boyi Li; Jean Kossaifi; Shourya Prakash Otta; Mohammad Amin Nabian; Maximilian Stadler; Christian Hundt 002; Kamyar Azizzadenesheli; Animashree Anandkumar (NeurIPS, 2023)

gpuPairHMM: High-speed Pair-HMM Forward Algorithm for DNA Variant Calling on GPUs. - Bertil Schmidt; Felix Kallenborn; Alexander Wichmann; Alejandro Chacón; Christian Hundt 002 (CoRR, 2024)

CUDASW++4.0: ultra-fast GPU-based Smith-Waterman protein sequence database search. - Bertil Schmidt; Felix Kallenborn; Alejandro Chacón; Christian Hundt 002 (BMC Bioinform., 2024)