A General Heap Processor. - Eduardo Sanchez; Patrick Sommer; Jacques Menu; Christian Iseli (IEEE Micro, 1987)

A high-level microprogrammed processor. - Christian Iseli; Eduardo Sanchez (MICRO, 1990)

A Microcode Compiler for the Watch-oriented RISC Processor. - Christian Iseli (Softw. Pract. Exp., 1990)

Beyond Superscalar Using FPGAs. - Christian Iseli; Eduardo Sanchez (ICCD, 1993)

A uniform network for VLSI massively parallel computers. - Kazuhiko Iwasaki; Christian Iseli; Yuji Sato (Syst. Comput. Jpn., 1993)

A Superscalar and Reconfigurable Processor. - Christian Iseli; Eduardo Sanchez (FPL, 1994)

A C++ compiler for FPGA custom execution units synthesis. - Christian Iseli; Eduardo Sanchez (FCCM, 1995)

Spyder: A SURE (SUperscalar and REconfigurable) processor. - Christian Iseli; Eduardo Sanchez (J. Supercomput., 1995)

Low-power design of 8-b embedded CoolRisc microcontroller cores. - Christian Piguet; Jean-Marc Masgonty; Claude Arm; Serge Durand; Thierry Schneider; Flavio Rampogna; Ciro Scarnera; Christian Iseli; Jean-Paul Bardyn; R. Pache; Evert Dijkstra (IEEE J. Solid State Circuits, 1997)

ESTScan: A Program for Detecting, Evaluating, and Reconstructing Potential Coding Regions in EST Sequences. - Christian Iseli; C. Victor Jongeneel; Philipp Bucher (ISMB, 1999)

trEST, trGEN and Hits: access to databases of predicted protein sequences. - Marco Pagni; Christian Iseli; Thomas Junier; Laurent Falquet; C. Victor Jongeneel; Philipp Bucher (Nucleic Acids Res., 2001)

Modeling sequencing errors by combining Hidden Markov models. - Claudio Lottaz; Christian Iseli; C. Victor Jongeneel; Philipp Bucher (ECCB, 2003)

trome, trEST and trGEN: databases of predicted protein sequences. - Peter Sperisen; Christian Iseli; Marco Pagni; Brian J. Stevenson; Philipp Bucher; C. Victor Jongeneel (Nucleic Acids Res., 2004)

Probabilistic base calling of Solexa sequencing data. - Jacques Rougemont; Arnaud Amzallag; Christian Iseli; Laurent Farinelli; Ioannis Xenarios; Felix Naef (BMC Bioinform., 2008)

ZFN-Site searches genomes for zinc finger nuclease target sites and off-target sites. - Thomas J. Cradick; Giovanna Ambrosini; Christian Iseli; Philipp Bucher; Anton P. McCaffrey (BMC Bioinform., 2011)

Genomic Data Clustering on FPGAs for Compression. - Enrico Petraglio; Rick Wertenbroek; Flavio Capitao; Nicolas Guex; Christian Iseli; Yann Thoma (ARC, 2017)

Towards in the Field Fast Pathogens Detection Using FPGAs. - Simone Casale Brunet; Thierry Schüpbach; Nicolas Guex; Christian Iseli; Alan J. Bridge; Dmitry Kuznetsov; Christian J. A. Sigrist; Phillippe Lemercier; Ioannis Xenarios; Endri Bezati (FPL, 2018)

SPICA: Swiss portal for immune cell analysis. - Massimo Andreatta; Fabrice P. A. David; Christian Iseli; Nicolas Guex; Santiago J. Carmona (Nucleic Acids Res., 2022)

Biomathematical enzyme kinetics model of prebiotic autocatalytic RNA networks: degenerating parasite-specific hyperparasite catalysts confer parasite resistance and herald the birth of molecular immunity. - Magnus Pirovino; Christian Iseli; Joseph A. Curran; Bernard Conrad (PLoS Comput. Biol., 2025)