Designing optimal cell factories: integer programming couples elementary mode analysis with regulation. - Christian Jungreuthmayer; Jürgen Zanghellini (BMC Syst. Biol., 2012)

A Detailed Heat and Fluid Flow Analysis of an Internal Permanent Magnet Synchronous Machine by Means of Computational Fluid Dynamics. - Christian Jungreuthmayer; Thomas Bäuml; Oliver Winter; Martin Ganchev; Hansjörg Kapeller; Anton Haumer; Christian Kral (IEEE Trans. Ind. Electron., 2012)

Designing an optimally ethanol producing E. coli strain using constrained minimal cut sets. - Christian Jungreuthmayer; Margot Sonnleitner; Gerald Striedner; Jürgen Mairhofer; Jürgen Zanghellini (EUSIPCO, 2013)

regEfmtool: Speeding up elementary flux mode calculation using transcriptional regulatory rules in the form of three-state logic. - Christian Jungreuthmayer; David E. Ruckerbauer; Jürgen Zanghellini (Biosyst., 2013)

Comparison and improvement of algorithms for computing minimal cut sets. - Christian Jungreuthmayer; Govind Nair; Steffen Klamt; Jürgen Zanghellini (BMC Bioinform., 2013)

Designing minimal microbial strains of desired functionality using a genetic algorithm. - Govind Nair; Christian Jungreuthmayer; Michael Hanscho; Jürgen Zanghellini (Algorithms Mol. Biol., 2015)

tEFMA: computing thermodynamically feasible elementary flux modes in metabolic networks. - Matthias P. Gerstl; Christian Jungreuthmayer; Jürgen Zanghellini (Bioinform., 2015)

Exact quantification of cellular robustness in genome-scale metabolic networks. - Matthias P. Gerstl; Steffen Klamt; Christian Jungreuthmayer; Jürgen Zanghellini (Bioinform., 2016)

ICT: isotope correction toolbox. - Christian Jungreuthmayer; Stefan Neubauer; Teresa Mairinger; Jürgen Zanghellini; Stephan Hann (Bioinform., 2016)

Optimal knockout strategies in genome-scale metabolic networks using particle swarm optimization. - Govind Nair; Christian Jungreuthmayer; Jürgen Zanghellini (BMC Bioinform., 2017)

From elementary flux modes to elementary flux vectors: Metabolic pathway analysis with arbitrary linear flux constraints. - Steffen Klamt; Georg Regensburger; Matthias P. Gerstl; Christian Jungreuthmayer; Stefan Schuster; Radhakrishnan Mahadevan; Jürgen Zanghellini; Stefan Müller 009 (PLoS Comput. Biol., 2017)