Towards a Semantic Description of Bio-Models: Meaning Facets - A Case Study. - Christian Knüpfer; Clemens Beckstein; Peter Dittrich (SMBM, 2006)

How to formalise the meaning of a bio-model: a case study. - Christian Knüpfer; Clemens Beckstein; Peter Dittrich (BMC Syst. Biol., 2007)

Function of dynamic models in systems biology: linking structure to behaviour. - Christian Knüpfer; Clemens Beckstein (J. Biomed. Semant., 2013)

Structure, function, and behaviour of computational models in systems biology. - Christian Knüpfer; Clemens Beckstein; Peter Dittrich; Nicolas Le Novère (BMC Syst. Biol., 2013)

Toward Community Standards and Software for Whole-Cell Modeling. - Dagmar Waltemath; Jonathan R. Karr; Frank T. Bergmann; Vijayalakshmi Chelliah; Michael Hucka; Marcus Krantz; Wolfram Liebermeister; Pedro Mendes 001; Chris J. Myers; Pinar Pir; Begum Alaybeyoglu; Naveen K. Aranganathan; et al. (IEEE Trans. Biomed. Eng., 2016)

Notions of similarity for systems biology models. - Ron Henkel; Robert Hoehndorf; Tim Kacprowski; Christian Knüpfer; Wolfram Liebermeister; Dagmar Waltemath (Briefings Bioinform., 2017)

carpentries/instructor-training: The Carpentries Instructor Training Februrary 2023. - Sarah M. Brown; Karen Word; Maneesha Sane; Kelly Barnes; Nathaniel Porter; Philipp Matthias Schaefer; Aleksandra Nenadic; Toby Hodges; Giordano Lipari; Andrzej Aleksander Romaniuk; Martino Sorbaro Sindaci; Aman Goel; et al. (Zenodo, 2023)