Evolutionary Dynamics and Optimization: Neutral Networks as Model-Landscapes for RNA Secondary-Structure Folding-Landscapes. - Christian V. Forst; Christian M. Reidys; Jacqueline Weber (ECAL, 1995)

Neutral Evolutionary Dynamics. - Christian V. Forst; Christian M. Reidys (German Conference on Bioinformatics, 1996)

Bio-molecular Shapes and Algebraic Structures. - Christian M. Reidys; Peter F. Stadler (Comput. Chem., 1996)

Neutral networks: a combinatorial perspective. - Stephan Kopp; Christian M. Reidys (Adv. Complex Syst., 1999)

Elements of a theory of computer simulation I: Sequential CA over random graphs. - Christopher L. Barrett; Christian M. Reidys (Appl. Math. Comput., 1999)

Sequential Dynamical Systems and Applications to Simulations. - Christopher L. Barrett; B. W. Bush; Stephan Kopp; Henning S. Mortveit; Christian M. Reidys (Annual Simulation Symposium, 2000)

Elements of a theory of simulation II: sequential dynamical systems. - Christopher L. Barrett; Henning S. Mortveit; Christian M. Reidys (Appl. Math. Comput., 2000)

Random Subgraphs of Cayley Graphs over p-Groups. - Christian M. Reidys (Eur. J. Comb., 2000)

On Acyclic Orientations and Sequential Dynamical Systems. - Christian M. Reidys (Adv. Appl. Math., 2001)

Elements of a theory of simulation III: equivalence of SDS. - Christopher L. Barrett; Henning S. Mortveit; Christian M. Reidys (Appl. Math. Comput., 2001)

Neutrality in fitness landscapes. - Christian M. Reidys; Peter F. Stadler (Appl. Math. Comput., 2001)

Discrete, sequential dynamical systems. - Henning S. Mortveit; Christian M. Reidys (Discret. Math., 2001)

Sequential dynamical systems. - Christopher L. Barrett; Henning S. Mortveit; Christian M. Reidys (Artif. Life Robotics, 2002)

Distances In Random Induced Subgraphs Of Generalized N-Cubes. - Christian M. Reidys (Comb. Probab. Comput., 2002)

Combinatorial Landscapes. - Christian M. Reidys; Peter F. Stadler (SIAM Rev., 2002)

ETS IV: Sequential dynamical systems: fixed points, invertibility and equivalence. - Christopher L. Barrett; Henning S. Mortveit; Christian M. Reidys (Appl. Math. Comput., 2003)

Reduction of Discrete Dynamical Systems over Graphs. - Henning S. Mortveit; Christian M. Reidys (Adv. Complex Syst., 2004)

Neutral Evolution and Mutation Rates of Sequential Dynamical Systems. - Henning S. Mortveit; Christian M. Reidys (Adv. Complex Syst., 2004)

On Asynchronous Cellular Automata. - Anders Å. Hansson; Henning S. Mortveit; Christian M. Reidys (Adv. Complex Syst., 2005)

On certain morphisms of sequential dynamical systems. - Christian M. Reidys (Discret. Math., 2005)

Combinatorics of Genotype-Phenotype Maps: An RNA Case Study. - Christian M. Reidys (Computational Complexity and Statistical Physics, 2006)

On a New Class of Load Balancing Network Protocols. - Stephan J. Eidenbenz; Anders A. Hansson; Venkatesh Ramaswamy; Christian M. Reidys (Adv. Complex Syst., 2007)

An Introduction to Sequential Dynamical Systems. - Henning S. Mortveit; Christian M. Reidys (Springer, 2008)

Crossings and Nestings in Tangled Diagrams. - William Y. C. Chen; Jing Qin 006; Christian M. Reidys (Electron. J. Comb., 2008)

Combinatorics of sequential dynamical systems. - Christian M. Reidys (Discret. Math., 2008)

Pseudoknot RNA Structures with Arc-Length >= 4. - Hillary S. W. Han; Christian M. Reidys (J. Comput. Biol., 2008)

Canonical RNA Pseudoknot Structures. - Gang Ma; Christian M. Reidys (J. Comput. Biol., 2008)

Combinatorial design of pseudoknot RNA. - Emma Yu Jin; Christian M. Reidys (Adv. Appl. Math., 2009)

Partition function and base pairing probabilities for RNA-RNA interaction prediction. - Fenix W. D. Huang; Jing Qin 006; Christian M. Reidys; Peter F. Stadler (Bioinform., 2009)

Sequence-structure relations of pseudoknot RNA. - Fenix W. D. Huang; Linda Y. M. Li; Christian M. Reidys (BMC Bioinform., 2009)

Efficient Counting and Asymptotics of k-Noncrossing Tangled Diagrams. - William Y. C. Chen; Jing Qin 006; Christian M. Reidys; Doron Zeilberger (Electron. J. Comb., 2009)

Large components in random induced subgraphs of n-cubes. - Christian M. Reidys (Discret. Math., 2009)

Folding 3-Noncrossing RNA Pseudoknot Structures. - Fenix W. D. Huang; Wade W. J. Peng; Christian M. Reidys (J. Comput. Biol., 2009)

On the decomposition of k-noncrossing RNA structures. - Emma Yu Jin; Christian M. Reidys (Adv. Appl. Math., 2010)

Inverse folding of RNA pseudoknot structures. - James Z. M. Gao; Linda Y. M. Li; Christian M. Reidys (Algorithms Mol. Biol., 2010)

Target prediction and a statistical sampling algorithm for RNA-RNA interaction. - Fenix W. D. Huang; Jing Qin 006; Christian M. Reidys; Peter F. Stadler (Bioinform., 2010)

On the Uniform Generation of Modular Diagrams. - Fenix W. D. Huang; Christian M. Reidys (Electron. J. Comb., 2010)

Modular, k-Noncrossing Diagrams. - Christian M. Reidys; Rita R. Wang; Albus Y. Y. Zhao (Electron. J. Comb., 2010)

RNA pseudoknot structures with arc-length >=3 and stack-length >=sigma. - Emma Yu Jin; Christian M. Reidys (Discret. Appl. Math., 2010)

Shapes of RNA Pseudoknot Structures. - Christian M. Reidys; Rita R. Wang (J. Comput. Biol., 2010)

Combinatorial Computational Biology of RNA - Pseudoknots and Neutral Networks. - Christian M. Reidys (Springer, 2011)

RNA-RNA interaction prediction based on multiple sequence alignments. - Andrew X. Li; Manja Marz; Jing Qin 006; Christian M. Reidys (Bioinform., 2011)

Topology and prediction of RNA pseudoknots. - Christian M. Reidys; Fenix W. D. Huang; Jørgen E. Andersen; Robert C. Penner; Peter F. Stadler; Markus E. Nebel (Bioinform., 2011)

Random induced subgraphs of Cayley graphs induced by transpositions. - Emma Yu Jin; Christian M. Reidys (Discret. Math., 2011)

Loops in Canonical RNA Pseudoknot Structures. - Markus E. Nebel; Christian M. Reidys; Rita R. Wang (J. Comput. Biol., 2011)

On the combinatorics of sparsification. - Fenix W. D. Huang; Christian M. Reidys (Algorithms Mol. Biol., 2012)

Addendum: topology and prediction of RNA pseudoknots. - Christian M. Reidys; Fenix W. D. Huang; Jørgen E. Andersen; Robert C. Penner; Peter F. Stadler; Markus E. Nebel (Bioinform., 2012)

Symmetric circular matchings and RNA folding. - Ivo L. Hofacker; Christian M. Reidys; Peter F. Stadler (Discret. Math., 2012)

Topology of RNA-RNA Interaction Structures. - Jørgen E. Andersen; Fenix W. D. Huang; Robert C. Penner; Christian M. Reidys (J. Comput. Biol., 2012)

The 5′-3′ Distance of RNA Secondary Structures. - Hillary S. W. Han; Christian M. Reidys (J. Comput. Biol., 2012)

A Phase Transition in Energy-Filtered RNA Secondary Structures. - Hillary S. W. Han; Christian M. Reidys (J. Comput. Biol., 2012)

Uniform generation of RNA pseudoknot structures with genus filtration - Fenix W. D. Huang; Markus E. Nebel; Christian M. Reidys (CoRR, 2013)

On Topological RNA Interaction Structures. - Jing Qin 006; Christian M. Reidys (J. Comput. Biol., 2013)

The evolution of the random reversal graph. - Christian M. Reidys; Emma Yu Jin (Appl. Math. Comput., 2014)

Shapes of Interacting RNA Complexes. - Benjamin M. M. Fu; Christian M. Reidys (J. Comput. Biol., 2014)

Combinatorics of γ-Structures. - Hillary S. W. Han; Thomas J. X. Li; Christian M. Reidys (J. Comput. Biol., 2014)

Evidence of higher order patterns in information transmission between nucleotide sequences and folded molecular shapes of RNA. - Christopher L. Barrett; Fenix W. D. Huang; Christian M. Reidys (BICT, 2015)

A simple framework on sorting permutations. - Ricky X. F. Chen; Christian M. Reidys (CoRR, 2015)

Topological language for RNA. - Fenix W. D. Huang; Christian M. Reidys (CoRR, 2016)

RNA Secondary Structures Having a Compatible Sequence of Certain Nucleotide Ratios. - Christopher L. Barrett; Thomas J. X. Li; Christian M. Reidys (J. Comput. Biol., 2016)

Plane Permutations and Applications to a Result of Zagier-Stanley and Distances of Permutations. - Ricky X. F. Chen; Christian M. Reidys (SIAM J. Discret. Math., 2016)

Sequence-structure relations of biopolymers. - Christopher L. Barrett; Fenix W. D. Huang; Christian M. Reidys (Bioinform., 2017)

A topological framework for signed permutations. - Fenix W. D. Huang; Christian M. Reidys (Discret. Math., 2017)

A Combinatorial Identity Concerning Plane Colored Trees and its Applications. - Ricky X. F. Chen; Christian M. Reidys (J. Integer Seq., 2017)

Degeneracy and genetic assimilation in RNA evolution. - Reza Rezazadegan; Christian M. Reidys (BMC Bioinform., 2018)

Network tomography: a new structure spectrum for studying network dynamics. - Ricky X. F. Chen; Christian M. Reidys; Andrei C. Bura (CoRR, 2018)

An Efficient Dual Sampling Algorithm with Hamming Distance Filtration. - Christopher L. Barrett; Qijun He; Fenix W. D. Huang; Christian M. Reidys (J. Comput. Biol., 2018)

A Boltzmann Sampler for 1-Pairs with Double Filtration. - Christopher L. Barrett; Qijun He; Fenix W. D. Huang; Christian M. Reidys (J. Comput. Biol., 2019)

D-Chain Tomography of Networks: A New Structure Spectrum and an Application to the SIR Process. - Ricky X. F. Chen; Andrei C. Bura; Christian M. Reidys (SIAM J. Appl. Dyn. Syst., 2019)

On an enhancement of RNA probing data using information theory. - Thomas J. X. Li; Christian M. Reidys (Algorithms Mol. Biol., 2020)

The energy-spectrum of bicompatible sequences. - Fenix W. D. Huang; Christopher L. Barrett; Christian M. Reidys (Algorithms Mol. Biol., 2021)

Loop homology of bi-secondary structures. - Andrei C. Bura; Qijun He; Christian M. Reidys (Discret. Math., 2021)

Multiscale Feedback Loops in SARS-CoV-2 Viral Evolution. - Christopher L. Barrett; Andrei C. Bura; Qijun He; Fenix W. D. Huang; Thomas J. X. Li; Michael S. Waterman; Christian M. Reidys (J. Comput. Biol., 2021)

A computational framework for weighted simplicial homology. - Andrei C. Bura; Neelav S. Dutta; Thomas J. X. Li; Christian M. Reidys (CoRR, 2022)

Michael Waterman's Contributions to Computational Biology and Bioinformatics. - Pavel A. Pevzner; Martin Vingron; Christian M. Reidys; Fengzhu Sun; Sorin Istrail (J. Comput. Biol., 2022)

The site linkage spectrum of data arrays. - Christopher L. Barrett; Andrei C. Bura; Fenix W. D. Huang; Christian M. Reidys (CoRR, 2024)