A simple algorithm to infer gene duplication and speciation events on a gene tree. - Christian M. Zmasek; Sean R. Eddy (Bioinform., 2001)

ATV: display and manipulation of annotated phylogenetic. - Christian M. Zmasek; Sean R. Eddy (Bioinform., 2001)

RIO: Analyzing proteomes by automated phylogenomics using resampled inference of orthologs. - Christian M. Zmasek; Sean R. Eddy (BMC Bioinform., 2002)

LumberJack: a heuristic tool for sequence alignment exploration and phylogenetic inference. - Carolyn J. Lawrence; Christian M. Zmasek; R. Kelly Dawe; Russell L. Malmberg (Bioinform., 2004)

phyloXML: XML for evolutionary biology and comparative genomics. - Mira V. Han; Christian M. Zmasek (BMC Bioinform., 2009)

The DBCLS BioHackathon: standardization and interoperability for bioinformatics web services and workflows. - Toshiaki Katayama; Kazuharu Arakawa; Mitsuteru Nakao; Keiichiro Ono; Kiyoko F. Aoki-Kinoshita; Yasunori Yamamoto; Atsuko Yamaguchi; Shuichi Kawashima; Hong-Woo Chun; Jan Aerts; Bruno Aranda; Lord H. Barboza; et al. (J. Biomed. Semant., 2010)

TOPSAN: a dynamic web database for structural genomics. - Kyle Ellrott; Christian M. Zmasek; Dana Weekes; S. Sri Krishna; Constantina Bakolitsa; Adam Godzik; John C. Wooley (Nucleic Acids Res., 2011)

GreenPhylDB v2.0: comparative and functional genomics in plants. - Mathieu Rouard; Valentin Guignon; Christelle Aluome; Marie-Angélique Laporte; Gaëtan Droc; Christian Walde; Christian M. Zmasek; Christophe Périn; Matthieu G. Conte (Nucleic Acids Res., 2011)

This Déjà Vu Feeling - Analysis of Multidomain Protein Evolution in Eukaryotic Genomes. - Christian M. Zmasek; Adam Godzik (PLoS Comput. Biol., 2012)

Phylotastic! Making tree-of-life knowledge accessible, reusable and convenient. - Arlin Stoltzfus; Hilmar Lapp; Naim Matasci; Helena F. Deus; Brian Sidlauskas; Christian M. Zmasek; Gaurav Vaidya; Enrico Pontelli; Karen Cranston; Rutger A. Vos; Campbell O. Webb; Luke J. Harmon; et al. (BMC Bioinform., 2013)

aLeaves facilitates on-demand exploration of metazoan gene family trees on MAFFT sequence alignment server with enhanced interactivity. - Shigehiro Kuraku; Christian M. Zmasek; Osamu Nishimura; Kazutaka Katoh (Nucleic Acids Res., 2013)

Structural genomics analysis of uncharacterized protein families overrepresented in human gut bacteria identifies a novel glycoside hydrolase. - Anna Sheydina; Ruth Y. Eberhardt; Daniel J. Rigden; Yuanyuan Chang; Zhanwen Li; Christian M. Zmasek; Herbert L. Axelrod; Adam Godzik (BMC Bioinform., 2014)

Influenza Research Database: An integrated bioinformatics resource for influenza virus research. - Yun Zhang 021; Brian D. Aevermann; Tavis K. Anderson; David F. Burke; Gwenaelle Dauphin; Zhiping Gu; Sherry He; Sanjeev Kumar; Christopher N. Larsen; Alexandra J. Lee; Xiaomei Li; Catherine Macken; et al. (Nucleic Acids Res., 2017)

Early detection of emerging SARS-CoV-2 variants of interest for experimental evaluation. - Zachary S. Wallace; James J. Davis 002; Anna Maria Niewiadomska; Robert D. Olson; Maulik Shukla; Rick Stevens; Yun Zhang 021; Christian M. Zmasek; Richard H. Scheuermann (Frontiers Bioinform., 2022)

Introducing the Bacterial and Viral Bioinformatics Resource Center (BV-BRC): a resource combining PATRIC, IRD and ViPR. - Robert D. Olson; Rida Assaf; Thomas S. Brettin; Neal Conrad; Clark Cucinell; James J. Davis 002; Donald M. Dempsey; Allan Dickerman; Emily M. Dietrich; Ronald W. Kenyon; Mehmet Kuscuoglu; Elliot J. Lefkowitz; et al. (Nucleic Acids Res., 2023)