acdc - Automated Contamination Detection and Confidence estimation for single-cell genome data. - Markus Lux; Jan Krüger; Christian Rinke; Irena Maus; Andreas Schlüter; Tanja Woyke; Alexander Sczyrba; Barbara Hammer (BMC Bioinform., 2016)

GTDB: an ongoing census of bacterial and archaeal diversity through a phylogenetically consistent, rank normalized and complete genome-based taxonomy. - Donovan H. Parks; Maria Chuvochina; Christian Rinke; Aaron J. Mussig; Pierre-Alain Chaumeil; Philip Hugenholtz (Nucleic Acids Res., 2022)