Detection and characterization of 3D-signature phosphorylation site motifs and their contribution towards improved phosphorylation site prediction in proteins. - Pawel Durek; Christian Schudoma; Wolfram Weckwerth; Joachim Selbig; Dirk Walther 001 (BMC Bioinform., 2009)

Modeling RNA loops using sequence homology and geometric constraints. - Christian Schudoma; Patrick May; Dirk Walther 001 (Bioinform., 2010)

Lost in folding space? Comparing four variants of the thermodynamic model for RNA secondary structure prediction. - Stefan Janssen; Christian Schudoma; Gerhard Steger; Robert Giegerich (BMC Bioinform., 2011)

proGenomes3: approaching one million accurately and consistently annotated high-quality prokaryotic genomes. - Anthony Fullam; Ivica Letunic; Thomas S. B. Schmidt; Quinten R. Ducarmon; Nicolai Karcher; Supriya Khedkar; Michael Kuhn 004; Martin Larralde; Oleksandr M. Maistrenko; Lukas Malfertheiner; Alessio Milanese; João F. Matias Rodrigues; et al. (Nucleic Acids Res., 2023)