TFmiR: a web server for constructing and analyzing disease-specific transcription factor and miRNA co-regulatory networks. - Mohamed Hamed; Christian Spaniol; Maryam Nazarieh; Volkhard Helms (Nucleic Acids Res., 2015)

Randomization Strategies Affect Motif Significance Analysis in TF-miRNA-Gene Regulatory Networks. - Sepideh Sadegh; Maryam Nazarieh; Christian Spaniol; Volkhard Helms (J. Integr. Bioinform., 2017)

TFmiR2: constructing and analyzing disease-, tissue- and process-specific transcription factor and microRNA co-regulatory networks. - Maryam Nazarieh; Mohamed Hamed; Christian Spaniol; Thorsten Will; Volkhard Helms (Bioinform., 2020)