Cytoscape Web: an interactive web-based network browser. - Christian Tannus Lopes; Max Franz; Farzana Kazi; Sylva L. Donaldson; Quaid Morris; Gary D. Bader (Bioinform., 2010)

The GeneMANIA prediction server: biological network integration for gene prioritization and predicting gene function. - David Warde-Farley; Sylva L. Donaldson; Ovi Comes; Khalid Zuberi; Rashad Badrawi; Pauline Chao; Max Franz; Chris Grouios; Farzana Kazi; Christian Tannus Lopes; Anson Maitland; Sara Mostafavi; et al. (Nucleic Acids Res., 2010)

GeneMANIA Prediction Server 2013 Update. - Khalid Zuberi; Max Franz; Harold Rodriguez; Jason Montojo; Christian Tannus Lopes; Gary D. Bader; Quaid Morris (Nucleic Acids Res., 2013)

The Cytoscape app article collection. - Alexander R. Pico; Gary D. Bader; Barry Demchak; Oriol Guitart Pla; Timothy Hull; William J. R. Longabaugh; Christian Tannus Lopes; Samad Lotia; Piet Molenaar; Jason Montojo; John H. Morris; Keiichiro Ono; et al. (F1000Research, 2014)

Cytoscape.js: a graph theory library for visualisation and analysis. - Max Franz; Christian Tannus Lopes; Gerardo Huck; Yue Dong; Selçuk Onur Sümer; Gary D. Bader (Bioinform., 2016)

The Cytoscape Automation app article collection. - Barry Demchak; David Otasek; Alexander R. Pico; Gary D. Bader; Keiichiro Ono; Brett Settle; Eric Sage; John H. Morris; William J. R. Longabaugh; Christian Tannus Lopes; Michael Kucera; Adam Treister; et al. (F1000Research, 2018)

GeneMANIA update 2018. - Max Franz; Harold Rodriguez; Christian Tannus Lopes; Khalid Zuberi; Jason Montojo; Gary D. Bader; Quaid Morris (Nucleic Acids Res., 2018)

Cytoscape.js 2023 update: a graph theory library for visualization and analysis. - Max Franz; Christian Tannus Lopes; Dylan Fong; Mike Kucera; Manfred Cheung; Metin Can Siper; Gerardo Huck; Yue Dong; Selçuk Onur Sümer; Gary D. Bader (Bioinform., 2023)