Inverse modeling using multi-block PLS to determine the environmental conditions that provide optimal cellular function. - Daehee Hwang; George Stephanopoulos; Christina Chan (Bioinform., 2004)

A Knowledge Driven Regression Model for Gene Expression and Microarray Analysis. - Rong Jin 001; Luo Si; Shireesh Srivastava; Zheng Li; Christina Chan (EMBC, 2006)

Using a state-space model with hidden variables to infer transcription factor activities. - Zheng Li; Stephen M. Shaw; Matthew J. Yedwabnick; Christina Chan (Bioinform., 2006)

A Three Stage Integrative Pathway Search (TIPS(c)) framework to identify toxicity relevant genes and pathways. - Zheng Li; Shireesh Srivastava; Sheenu Mittal; Xuerui Yang; Lufang Sheng; Christina Chan (BMC Bioinform., 2007)

A hierarchical approach employing metabolic and gene expression profiles to identify the pathways that confer cytotoxicity in HepG2 cells. - Zheng Li; Shireesh Srivastava; Xuerui Yang; Sheenu Mittal; Paul Norton; James H. Resau; Brian B. Haab; Christina Chan (BMC Syst. Biol., 2007)

Using Knowledge Driven Matrix Factorization to Reconstruct Modular Gene Regulatory Network. - Yang Zhou 033; Zheng Li; Xuerui Yang; Linxia Zhang; Shireesh Srivastava; Rong Jin 001; Christina Chan (AAAI, 2008)

Short time-series microarray analysis: Methods and challenges. - Xuewei Wang; Ming Wu; Zheng Li; Christina Chan (BMC Syst. Biol., 2008)

A Bayesian framework for knowledge driven regression model in micro-array data analysis. - Rong Jin 001; Luo Si; Christina Chan (Int. J. Data Min. Bioinform., 2008)

Reconstruct modular phenotype-specific gene networks by knowledge-driven matrix factorization. - Xuerui Yang; Yang Zhou 033; Rong Jin 001; Christina Chan (Bioinform., 2009)

Learning transcriptional regulation on a genome scale: a theoretical analysis based on gene expression data. - Ming Wu; Christina Chan (Briefings Bioinform., 2012)

A multi-layer inference approach to reconstruct condition-specific genes and their regulation. - Ming Wu; Li Liu; Hussein Hijazi; Christina Chan (Bioinform., 2013)

Signaling dynamics of palmitate-induced ER stress responses mediated by ATF4 in HepG2 cells. - Hyunju Cho; Ming Wu; Linxia Zhang; Ryan Thompson; Aritro Nath; Christina Chan (BMC Syst. Biol., 2013)

Image segmentation of mesenchymal stem cells in diverse culturing conditions. - Muhammad Jamal Afridi; Chun Liu 002; Christina Chan; Seungik Baek; Xiaoming Liu 002 (WACV, 2014)

Prediction of therapeutic microRNA based on the human metabolic network. - Ming Wu; Christina Chan (Bioinform., 2014)

Lower connectivity of tumor coexpression networks is not specific to cancer. - Ertugrul Dalgic; Özlen Konu; Zehra Safi Oz; Christina Chan (Silico Biol., 2019)