Two-way Bayesian hierarchical phylogenetic models: An application to the co-evolution of gp120 and gp41 during and after enfuvirtide treatment. - Christina M. R. Kitchen; Jing Kroll; Daniel R. Kuritzkes; Erik Bloomquist; Steven G. Deeks; Marc A. Suchard (Comput. Stat. Data Anal., 2009)

Random Forests and Fuzzy Forests in Biomedical Research. - Daniel Conn; Christina M. Ramirez (Computational Social Science, 2016)

FREEtree: A Tree-based Approach for High Dimensional Longitudinal Data With Correlated Features. - Yuancheng Xu; Athanasse Zafirov; R. Michael Alvarez; Dan Kojis; Min Tan; Christina M. Ramirez (CoRR, 2020)

Pandemic velocity: Forecasting COVID-19 in the US with a machine learning & Bayesian time series compartmental model. - Gregory L. Watson; Di Xiong; Lu Zhang; Joseph A. Zoller; John Shamshoian; Phillip Sundin; Teresa Bufford; Anne W. Rimoin; Marc A. Suchard; Christina M. Ramirez (PLoS Comput. Biol., 2021)

A review of feature selection strategies utilizing graph data structures and Knowledge Graphs. - Sisi Shao; Pedro Henrique Ribeiro; Christina M. Ramirez; Jason H. Moore (Briefings Bioinform., 2024)

Decreased but persistent epigenetic age acceleration is associated with changes in T-cell subsets after initiation of highly active antiretroviral therapy in persons living with HIV. - Mary E. Sehl; Elizabeth Crabb Breen; Roger Shih; Fengxue Li; Joshua Zhang; Peter Langfelder; Steve Horvath; Jay H. Bream; Priya Duggal; Jeremy Martinson; Steven M. Wolinsky; Otoniel Martinez-Maza; et al. (Frontiers Bioinform., 2024)

Effects of highly active antiretroviral therapy initiation on epigenomic DNA methylation in persons living with HIV. - Joshua Zhang; Mary E. Sehl; Roger Shih; Elizabeth Crabb Breen; Fengxue Li; Ake T. Lu; Jay H. Bream; Priya Duggal; Jeremy Martinson; Steven M. Wolinsky; Otoniel Martinez-Maza; Christina M. Ramirez; et al. (Frontiers Bioinform., 2024)