Local Exact Pattern Matching for Non-fixed RNA Structures. - Mika Amit; Rolf Backofen; Steffen Heyne; Gad M. Landau; Mathias Möhl; Christina Schmiedl; Sebastian Will (CPM, 2012)

Exact Pattern Matching for RNA Structure Ensembles. - Christina Schmiedl; Mathias Möhl; Steffen Heyne; Mika Amit; Gad M. Landau; Sebastian Will; Rolf Backofen (RECOMB, 2012)

SPARSE: Quadratic Time Simultaneous Alignment and Folding of RNAs without Sequence-Based Heuristics. - Sebastian Will; Christina Schmiedl; Milad Miladi; Mathias Möhl; Rolf Backofen (RECOMB, 2013)