Interpretable model of CRISPR-Cas9 enzymatic reactions. - David J. Wen; Christina V. Theodoris (Nat. Comput. Sci., 2023)

How to Build the Virtual Cell with Artificial Intelligence: Priorities and Opportunities. - Charlotte Bunne; Yusuf H. Roohani; Yanay Rosen; Ankit Gupta; Xikun Zhang 001; Marcel Roed; Theo Alexandrov; Mohammed AlQuraishi; Patricia Brennan; Daniel B. Burkhardt; Andrea Califano; Jonah Cool; et al. (CoRR, 2024)

Current opinions on large cellular models. - Minsheng Hao; Lei Wei; Fan Yang 081; Jianhua Yao 001; Christina V. Theodoris; Bo Wang 044; Xin Li; Ge Yang 002; Xuegong Zhang (Quant. Biol., 2024)

Perspectives on benchmarking foundation models for network biology. - Christina V. Theodoris (Quant. Biol., 2024)