A Protein Structure Comparison Methodology. - Nigel P. Brown; Christine A. Orengo; William R. Taylor (Comput. Chem., 1996)

[Invited Lecture] Protein Folds and Functions. - Janet M. Thornton; Andrew C. R. Martin; Christine A. Orengo; Duncan Milburn; Roman A. Laskowski (German Conference on Bioinformatics, 1998)

The CATH Database provides insights into protein structure/function relationships. - Christine A. Orengo; Frances M. G. Pearl; James E. Bray; Annabel E. Todd; A. C. Martin; Loredana Lo Conte; Janet M. Thornton (Nucleic Acids Res., 1999)

Assigning genomic sequences to CATH. - Frances M. G. Pearl; David A. Lee; James E. Bray; Ian Sillitoe; Annabel E. Todd; Andrew P. Harrison; Janet M. Thornton; Christine A. Orengo (Nucleic Acids Res., 2000)

A Framework for Modelling Short, High-Dimensional Multivariate Time Series: Preliminary Results in Virus Gene Expression Data Analysis. - Paul Kellam; Xiaohui Liu 001; Nigel J. Martin 001; Christine A. Orengo; Stephen Swift; Allan Tucker (IDA, 2001)

VIDA: a virus database system for the organization of animal virus genome open reading frames. - M. Mar Albà; David A. Lee; Frances M. G. Pearl; Adrian J. Shepherd; Nigel J. Martin 001; Christine A. Orengo; Paul Kellam (Nucleic Acids Res., 2001)

A rapid classification protocol for the CATH Domain Database to support structural genomics. - Frances M. G. Pearl; Nigel J. Martin 001; James E. Bray; Daniel W. A. Buchan; Andrew P. Harrison; David A. Lee; Gabrielle A. Reeves; Adrian J. Shepherd; Ian Sillitoe; Annabel E. Todd; Janet M. Thornton; Christine A. Orengo (Nucleic Acids Res., 2001)

PFDB: a generic protein family database integrating the CATH domain structure database with sequence based protein family resources. - Adrian J. Shepherd; Nigel J. Martin 001; Roger G. Johnson; Paul Kellam; Christine A. Orengo (Bioinform., 2002)

A framework for modelling virus gene expression data. - Paul Kellam; Xiaohui Liu 001; Nigel J. Martin 001; Christine A. Orengo; Stephen Swift; Allan Tucker (Intell. Data Anal., 2002)

A Structural Perspective on Genome Evolution(Invited Talk). - Christine A. Orengo (German Conference on Bioinformatics, 2003)

Recognizing the fold of a protein structure. - Andrew P. Harrison; Frances M. G. Pearl; Ian Sillitoe; Tim Slidel; Richard Mott; Janet M. Thornton; Christine A. Orengo (Bioinform., 2003)

Gene3D: structural assignments for the biologist and bioinformaticist alike. - Daniel W. A. Buchan; Stuart C. G. Rison; James E. Bray; David A. Lee; Frances M. G. Pearl; Janet M. Thornton; Christine A. Orengo (Nucleic Acids Res., 2003)

The CATH database: an extended protein family resource for structural and functional genomics. - Frances M. G. Pearl; C. F. Bennett; James E. Bray; Andrew P. Harrison; Nigel J. Martin 001; Adrian J. Shepherd; Ian Sillitoe; Janet M. Thornton; Christine A. Orengo (Nucleic Acids Res., 2003)

BioMap: Gene Family based Integration of Heterogeneous Biological Databases Using AutoMed Metadata. - Michael Maibaum; Galia Rimon; Christine A. Orengo; Nigel J. Martin 001; Alexandra Poulovassilis (DEXA Workshops, 2004)

Consensus Clustering and Functional Interpretation of Gene Expression Data. - Paul Kellam; Stephen Swift; Allan Tucker; Veronica Vinciotti; Nigel J. Martin 001; Christine A. Orengo; Xiaohui Liu 001 (Spanish Bioinformatics Conference, 2004)

Microeconomic Principles Explain an Optimal Genome Size in Bacteria. - Juan Garcia Ranea; Alastair Grant; Janet M. Thornton; Christine A. Orengo (Spanish Bioinformatics Conference, 2004)

A structural perspective on genome evolution. - David A. Lee; Alastair Grant; Ian Sillitoe; Mark Dibley; Juan Garcia Ranea; Christine A. Orengo (RECOMB, 2004)

A practical and robust sequence search strategy for structural genomics target selection. - James E. Bray; Russell L. Marsden; Stuart C. G. Rison; Alexei Savchenko; Aled M. Edwards; Janet M. Thornton; Christine A. Orengo (Bioinform., 2004)

EyeSite: a semi-automated database of protein families in the eye. - David A. Lee; Sandrine Fefeu; Adrian A. Edo-Ukeh; Christine A. Orengo; Christine Slingsby (Nucleic Acids Res., 2004)

Cluster Based Integration of Heterogeneous Biological Databases Using the AutoMed Toolkit. - Michael Maibaum; Lucas Zamboulis; Galia Rimon; Christine A. Orengo; Nigel J. Martin 001; Alexandra Poulovassilis (DILS, 2005)

The CATH Domain Structure Database and related resources Gene3D and DHS provide comprehensive domain family information for genome analysis. - Frances M. G. Pearl; Annabel E. Todd; Ian Sillitoe; Mark Dibley; Oliver Redfern; Tony E. Lewis; Christopher Bennett; Russell L. Marsden; Alastair Grant; David A. Lee; Adrian Akpor; Michael Maibaum; et al. (Nucleic Acids Res., 2005)

Improved Robustness in Time Series Analysis of Gene Expression Data by Polynomial Model Based Clustering. - Michael Hirsch 003; Allan Tucker; Stephen Swift; Nigel J. Martin 001; Christine A. Orengo; Paul Kellam; Xiaohui Liu 001 (CompLife, 2006)

Gene3D: modelling protein structure, function and evolution. - Corin Yeats; Michael Maibaum; Russell L. Marsden; Mark Dibley; David A. Lee; Sarah Addou; Christine A. Orengo (Nucleic Acids Res., 2006)

Methods of remote homology detection can be combined to increase coverage by 10% in the midnight zone. - Adam James Reid; Corin Yeats; Christine A. Orengo (Bioinform., 2007)

Establishing a major cause of discrepancy in the calibration of Affymetrix GeneChips. - Andrew P. Harrison; Caroline E. Johnston; Christine A. Orengo (BMC Bioinform., 2007)

Towards a comprehensive structural coverage of completed genomes: a structural genomics viewpoint. - Russell L. Marsden; Tony A. Lewis; Christine A. Orengo (BMC Bioinform., 2007)

The CATH domain structure database: new protocols and classification levels give a more comprehensive resource for exploring evolution. - Lesley H. Greene; Tony E. Lewis; Sarah Addou; Alison L. Cuff; Timothy Dallman; Mark Dibley; Oliver Redfern; Frances M. G. Pearl; Rekha Nambudiry; Adam James Reid; Ian Sillitoe; Corin Yeats; et al. (Nucleic Acids Res., 2007)

New developments in the InterPro database. - Nicola J. Mulder; Rolf Apweiler; Teresa K. Attwood; Amos Bairoch; Alex Bateman; David Binns; Peer Bork; Virginie Buillard; Lorenzo Cerutti; Richard R. Copley; Emmanuel Courcelle; Ujjwal Das; et al. (Nucleic Acids Res., 2007)

Inferring Function Using Patterns of Native Disorder in Proteins. - Anna E. Lobley; Mark B. Swindells; Christine A. Orengo; David T. Jones (PLoS Comput. Biol., 2007)

Predicting Protein Function with Hierarchical Phylogenetic Profiles: The Gene3D Phylo-Tuner Method Applied to Eukaryotic Genomes. - Juan A. G. Ranea; Corin Yeats; Alastair Grant; Christine A. Orengo (PLoS Comput. Biol., 2007)

CATHEDRAL: A Fast and Effective Algorithm to Predict Folds and Domain Boundaries from Multidomain Protein Structures. - Oliver Redfern; Andrew P. Harrison; Timothy Dallman; Frances M. G. Pearl; Christine A. Orengo (PLoS Comput. Biol., 2007)

LigASite - a database of biologically relevant binding sites in proteins with known apo-structures. - Benoit H. Dessailly; Marc F. Lensink; Christine A. Orengo; Shoshana J. Wodak (Nucleic Acids Res., 2008)

FFPred: an integrated feature-based function prediction server for vertebrate proteomes. - Anna E. Lobley; Timothy Nugent; Christine A. Orengo; David T. Jones (Nucleic Acids Res., 2008)

ISPIDER Central: an integrated database web-server for proteomics. - Jennifer A. Siepen; Khalid Belhajjame; Julian N. Selley; Suzanne M. Embury; Norman W. Paton; Carole A. Goble; Stephen G. Oliver; Robert Stevens 001; Lucas Zamboulis; Nigel J. Martin 001; Alexandra Poulovassilis; Philip Jones; et al. (Nucleic Acids Res., 2008)

Gene3D: comprehensive structural and functional annotation of genomes. - Corin Yeats; Jonathan G. Lees; Adam James Reid; Paul Kellam; Nigel J. Martin 001; Xinhui Liu; Christine A. Orengo (Nucleic Acids Res., 2008)

An integrated approach to the interpretation of Single Amino Acid Polymorphisms within the framework of CATH and Gene3D. - José M. G. Izarzugaza; Anja Baresic; Lisa E. M. McMillan; Corin Yeats; Andrew B. Clegg; Christine A. Orengo; Andrew C. R. Martin; Alfonso Valencia (BMC Bioinform., 2009)

The CATH classification revisited - architectures reviewed and new ways to characterize structural divergence in superfamilies. - Alison L. Cuff; Ian Sillitoe; Tony E. Lewis; Oliver Redfern; Richard Garratt; Janet M. Thornton; Christine A. Orengo (Nucleic Acids Res., 2009)

InterPro: the integrative protein signature database. - Sarah Hunter; Rolf Apweiler; Teresa K. Attwood; Amos Bairoch; Alex Bateman; David Binns; Peer Bork; Ujjwal Das; Louise C. Daugherty; Lauranne Duquenne; Robert D. Finn; Julian Gough; et al. (Nucleic Acids Res., 2009)

FLORA: A Novel Method to Predict Protein Function from Structure in Diverse Superfamilies. - Oliver Redfern; Benoit H. Dessailly; Timothy Dallman; Ian Sillitoe; Christine A. Orengo (PLoS Comput. Biol., 2009)

A fast and automated solution for accurately resolving protein domain architectures. - Corin Yeats; Oliver Redfern; Christine A. Orengo (Bioinform., 2010)

Gene3D: merging structure and function for a Thousand genomes. - Jonathan G. Lees; Corin Yeats; Oliver Redfern; Andrew B. Clegg; Christine A. Orengo (Nucleic Acids Res., 2010)

Finding the "Dark Matter" in Human and Yeast Protein Network Prediction and Modelling. - Juan A. G. Ranea; Ian Morilla; Jonathan G. Lees; Adam James Reid; Corin Yeats; Andrew B. Clegg; Francisca Sánchez-Jiménez; Christine A. Orengo (PLoS Comput. Biol., 2010)

Characterization of pathogenic germline mutations in human Protein Kinases. - José M. G. Izarzugaza; Lisa E. M. Hopcroft; Anja Baresic; Christine A. Orengo; Andrew C. R. Martin; Alfonso Valencia (BMC Bioinform., 2011)

Extending CATH: increasing coverage of the protein structure universe and linking structure with function. - Alison L. Cuff; Ian Sillitoe; Tony E. Lewis; Andrew B. Clegg; Robert Rentzsch; Nicholas Furnham; Marialuisa Pellegrini-Calace; David T. Jones; Janet M. Thornton; Christine A. Orengo (Nucleic Acids Res., 2011)

The Gene3D Web Services: a platform for identifying, annotating and comparing structural domains in protein sequences. - Corin Yeats; Jonathan G. Lees; Phil Carter; Ian Sillitoe; Christine A. Orengo (Nucleic Acids Res., 2011)

FunTree: a resource for exploring the functional evolution of structurally defined enzyme superfamilies. - Nicholas Furnham; Ian Sillitoe; Gemma L. Holliday; Alison L. Cuff; Syed Asad Rahman; Roman A. Laskowski; Christine A. Orengo; Janet M. Thornton (Nucleic Acids Res., 2012)

InterPro in 2011: new developments in the family and domain prediction database. - Sarah Hunter; Philip Jones; Alex L. Mitchell; Rolf Apweiler; Teresa K. Attwood; Alex Bateman; Thomas Bernard; David Binns; Peer Bork; Sarah W. Burge; Edouard De Castro; Penny C. Coggill; et al. (Nucleic Acids Res., 2012)

Gene3D: a domain-based resource for comparative genomics, functional annotation and protein network analysis. - Jonathan G. Lees; Corin Yeats; James Richard Perkins; Ian Sillitoe; Robert Rentzsch; Benoit H. Dessailly; Christine A. Orengo (Nucleic Acids Res., 2012)

Exploring the Evolution of Novel Enzyme Functions within Structurally Defined Protein Superfamilies. - Nicholas Furnham; Ian Sillitoe; Gemma L. Holliday; Alison L. Cuff; Roman A. Laskowski; Christine A. Orengo; Janet M. Thornton (PLoS Comput. Biol., 2012)

Protein function prediction using domain families. - Robert Rentzsch; Christine A. Orengo (BMC Bioinform., 2013)

Genome3D: a UK collaborative project to annotate genomic sequences with predicted 3D structures based on SCOP and CATH domains. - Tony E. Lewis; Ian Sillitoe; Antonina Andreeva; Tom L. Blundell; Daniel W. A. Buchan; Cyrus Chothia; Alison L. Cuff; Jose M. Dana; Ioannis Filippis; Julian Gough; Sarah Hunter; David T. Jones; et al. (Nucleic Acids Res., 2013)

New functional families (FunFams) in CATH to improve the mapping of conserved functional sites to 3D structures. - Ian Sillitoe; Alison L. Cuff; Benoit H. Dessailly; Natalie L. Dawson; Nicholas Furnham; David A. Lee; Jonathan G. Lees; Tony E. Lewis; Romain A. Studer; Robert Rentzsch; Corin Yeats; Janet M. Thornton; et al. (Nucleic Acids Res., 2013)

Gene3D: Multi-domain annotations for protein sequence and comparative genome analysis. - Jonathan G. Lees; David A. Lee; Romain A. Studer; Natalie L. Dawson; Ian Sillitoe; Sayoni Das; Corin Yeats; Benoit H. Dessailly; Robert Rentzsch; Christine A. Orengo (Nucleic Acids Res., 2014)

Functional classification of CATH superfamilies: a domain-based approach for protein function annotation. - Sayoni Das; David A. Lee; Ian Sillitoe; Natalie L. Dawson; Jonathan G. Lees; Christine A. Orengo (Bioinform., 2015)

FUN-L: gene prioritization for RNAi screens. - Jonathan G. Lees; Jean-Karim Hériché; Ian Morilla; José María Fernández 001; Priit Adler; Martin Krallinger; Jaak Vilo; Alfonso Valencia; Jan Ellenberg; Juan A. G. Ranea; Christine A. Orengo (Bioinform., 2015)

CATH FunFHMMer web server: protein functional annotations using functional family assignments. - Sayoni Das; Ian Sillitoe; David A. Lee; Jonathan G. Lees; Natalie L. Dawson; John Ward; Christine A. Orengo (Nucleic Acids Res., 2015)

Genome3D: exploiting structure to help users understand their sequences. - Tony E. Lewis; Ian Sillitoe; Antonina Andreeva; Tom L. Blundell; Daniel W. A. Buchan; Cyrus Chothia; Domenico Cozzetto; Jose M. Dana; Ioannis Filippis; Julian Gough; David T. Jones; Lawrence A. Kelley; et al. (Nucleic Acids Res., 2015)

The InterPro protein families database: the classification resource after 15 years. - Alex L. Mitchell; Hsin-Yu Chang; Louise C. Daugherty; Matthew Fraser; Sarah Hunter; Rodrigo Lopez; Craig McAnulla; Conor McMenamin; Gift Nuka; Sebastien Pesseat; Amaia Sangrador-Vegas; Maxim Scheremetjew; et al. (Nucleic Acids Res., 2015)

CATH: comprehensive structural and functional annotations for genome sequences. - Ian Sillitoe; Tony E. Lewis; Alison L. Cuff; Sayoni Das; Paul Ashford; Natalie L. Dawson; Nicholas Furnham; Roman A. Laskowski; David A. Lee; Jonathan G. Lees; Sonja Lehtinen; Romain A. Studer; et al. (Nucleic Acids Res., 2015)

Gene3D: expanding the utility of domain assignments. - Su Datt Lam; Natalie L. Dawson; Sayoni Das; Ian Sillitoe; Paul Ashford; David A. Lee; Sonja Lehtinen; Christine A. Orengo; Jonathan G. Lees (Nucleic Acids Res., 2016)

ISCB's Initial Reaction to The New England Journal of Medicine Editorial on Data Sharing. - Bonnie Berger; Terry Gaasterland; Thomas Lengauer; Christine A. Orengo; Bruno Gaëta; Scott Markel; Alfonso Valencia (PLoS Comput. Biol., 2016)

Novel Computational Protocols for Functionally Classifying and Characterising Serine Beta-Lactamases. - David A. Lee; Sayoni Das; Natalie L. Dawson; Dragana Dobrijevic; John Ward; Christine A. Orengo (PLoS Comput. Biol., 2016)

ISCB's initial reaction to New England Journal of Medicine editorial on data sharing. - Bonnie Berger; Terry Gaasterland; Thomas Lengauer; Christine A. Orengo; Bruno Gaëta; Scott Markel; Alfonso Valencia (Bioinform., 2017)

CATH: an expanded resource to predict protein function through structure and sequence. - Natalie L. Dawson; Tony E. Lewis; Sayoni Das; Jonathan G. Lees; David A. Lee; Paul Ashford; Christine A. Orengo; Ian Sillitoe (Nucleic Acids Res., 2017)

InterPro in 2017 - beyond protein family and domain annotations. - Robert D. Finn; Teresa K. Attwood; Patricia C. Babbitt; Alex Bateman; Peer Bork; Alan J. Bridge; Hsin-Yu Chang; Zsuzsanna Dosztányi; Sara El-Gebali; Matthew Fraser; Julian Gough; David Haft; et al. (Nucleic Acids Res., 2017)

Analysis of temporal transcription expression profiles reveal links between protein function and developmental stages of Drosophila melanogaster. - Cen Wan; Jonathan G. Lees; Federico Minneci; Christine A. Orengo; David T. Jones (PLoS Comput. Biol., 2017)

Gene3D: Extensive prediction of globular domains in proteins. - Tony E. Lewis; Ian Sillitoe; Natalie L. Dawson; Su Datt Lam; Tristan Clarke; David A. Lee; Christine A. Orengo; Jonathan G. Lees (Nucleic Acids Res., 2018)

Associating Protein Domains with Biological Functions: A Tripartite Network Approach. - Elena Rojano; James Richard Perkins; Ian Sillitoe; Christine A. Orengo; Juan Antonio Garcia-Ranea; Pedro Seoane (IWBBIO (2), 2019)

FunFam protein families improve residue level molecular function prediction. - Linus Scheibenreif; Maria Littmann; Christine A. Orengo; Burkhard Rost (BMC Bioinform., 2019)

InterPro in 2019: improving coverage, classification and access to protein sequence annotations. - Alex L. Mitchell; Teresa K. Attwood; Patricia C. Babbitt; Matthias Blum; Peer Bork; Alan J. Bridge; Shoshana D. Brown; Hsin-Yu Chang; Sara El-Gebali; Matthew Fraser; Julian Gough; David Haft; et al. (Nucleic Acids Res., 2019)

CATH: expanding the horizons of structure-based functional annotations for genome sequences. - Ian Sillitoe; Natalie L. Dawson; Tony E. Lewis; Sayoni Das; Jonathan G. Lees; Paul Ashford; Adeyelu Tolulope; Harry M. Scholes; Ilya Senatorov; Andra Bujan; Fatima Ceballos Rodriguez-Conde; Benjamin Dowling; et al. (Nucleic Acids Res., 2019)

Protein Structure Classification. - Natalie L. Dawson; Sayoni Das; Jonathan G. Lees; Christine A. Orengo (Encyclopedia of Bioinformatics and Computational Biology (2), 2019)

The ELIXIR Core Data Resources: fundamental infrastructure for the life sciences. - Rachel Drysdale; Charles E. Cook; Robert Petryszak; Vivienne Baillie Gerritsen; Mary Barlow; Elisabeth Gasteiger; Franziska Gruhl; Jürgen Haas; Jerry Lanfear; Rodrigo Lopez; Nicole Redaschi; Heinz Stockinger; et al. (Bioinform., 2020)

Genome3D: integrating a collaborative data pipeline to expand the depth and breadth of consensus protein structure annotation. - Ian Sillitoe; Antonina Andreeva; Tom L. Blundell; Daniel W. A. Buchan; Robert D. Finn; Julian Gough; David T. Jones; Lawrence A. Kelley; Typhaine Paysan-Lafosse; Su Datt Lam; Alexey G. Murzin; Arun Prasad Pandurangan; et al. (Nucleic Acids Res., 2020)

PDBe-KB: a community-driven resource for structural and functional annotations. - Mihaly Varadi; John M. Berrisford; Mandar S. Deshpande; Sreenath Nair; Aleksandras Gutmanas; David R. Armstrong; Lukás Pravda; Bissan Al-Lazikani; Stephen Anyango; Geoffrey J. Barton; Karel Berka; Tom L. Blundell; et al. (Nucleic Acids Res., 2020)

The impact of structural bioinformatics tools and resources on SARS-CoV-2 research and therapeutic strategies. - Vaishali P. Waman; Neeladri Sen; Mihaly Varadi; Antoine Daina; Shoshana J. Wodak; Vincent Zoete; Sameer Velankar; Christine A. Orengo (Briefings Bioinform., 2021)

CATH functional families predict functional sites in proteins. - Sayoni Das; Harry M. Scholes; Neeladri Sen; Christine A. Orengo (Bioinform., 2021)

Clustering FunFams using sequence embeddings improves EC purity. - Maria Littmann; Nicola Bordin; Michael Heinzinger; Konstantin Schütze; Christian Dallago; Christine A. Orengo; Burkhard Rost (Bioinform., 2021)

The InterPro protein families and domains database: 20 years on. - Matthias Blum; Hsin-Yu Chang; Sara Chuguransky; Tiago Grego; Swaathi Kandasamy; Alex L. Mitchell; Gift Nuka; Typhaine Paysan-Lafosse; Matloob Qureshi; Shriya Raj; Lorna J. Richardson; Gustavo A. Salazar; et al. (Nucleic Acids Res., 2021)

CATH: increased structural coverage of functional space. - Ian Sillitoe; Nicola Bordin; Natalie L. Dawson; Vaishali P. Waman; Paul Ashford; Harry M. Scholes; Camilla S. M. Pang; Laurel Woodridge; Clemens Rauer; Neeladri Sen; Mahnaz Abbasian; Sean Le Cornu; et al. (Nucleic Acids Res., 2021)

Biological impact of mutually exclusive exon switching. - Su Datt Lam; M. Madan Babu; Jonathan G. Lees; Christine A. Orengo (PLoS Comput. Biol., 2021)

Characterizing and explaining the impact of disease-associated mutations in proteins without known structures or structural homologs. - Neeladri Sen; Ivan Anishchenko; Nicola Bordin; Ian Sillitoe; Sameer Velankar; David Baker 001; Christine A. Orengo (Briefings Bioinform., 2022)

A roadmap for the functional annotation of protein families: a community perspective. - Valérie de Crécy-Lagard; Rocio Amorin de Hegedus; Cecilia N. Arighi; Jill Babor; Alex Bateman; Ian Blaby; Crysten Blaby-Haas; Alan J. Bridge; Stephen K. Burley; Stacey Cleveland; Lucy J. Colwell; Ana Conesa; et al. (Database J. Biol. Databases Curation, 2022)

Srinivasan (1962-2021) in Bioinformatics and beyond. - M. Michael Gromiha; Christine A. Orengo; Ramanathan Sowdhamini; Janet M. Thornton (Bioinform., 2022)

Characterizing domain-specific open educational resources by linking ISCB Communities of Special Interest to Wikipedia. - Alastair M. Kilpatrick; Farzana Rahman; Audra Anjum; Sayane Shome; K. M. Salim Andalib; Shrabonti Banik; Sanjana F. Chowdhury; Peter Coombe; Yesid Cuesta Astroz; J. Maxwell Douglas; Pradeep Eranti; Aleyna D. Kiran; et al. (Bioinform., 2022)

Assigning protein function from domain-function associations using DomFun. - Elena Rojano; Fernando Moreno Jabato; James Richard Perkins; José Córdoba-Caballero; Federico García-Criado; Ian Sillitoe; Christine A. Orengo; Juan A. G. Ranea; Pedro Seoane-Zonjic (BMC Bioinform., 2022)

PDBe-KB: collaboratively defining the biological context of structural data. - Mihaly Varadi; Stephen Anyango; David R. Armstrong; John M. Berrisford; Preeti Choudhary; Mandar S. Deshpande; Nurul Nadzirin; Sreenath Nair; Lukás Pravda; Ahsan Tanweer; Bissan Al-Lazikani; Claudia Andreini; et al. (Nucleic Acids Res., 2022)

Dissecting peripheral protein-membrane interfaces. - Thibault Tubiana; Ian Sillitoe; Christine A. Orengo; Nathalie Reuter (PLoS Comput. Biol., 2022)

CATHe: detection of remote homologues for CATH superfamilies using embeddings from protein language models. - Vamsi Nallapareddy; Nicola Bordin; Ian Sillitoe; Michael Heinzinger; Maria Littmann; Vaishali P. Waman; Neeladri Sen; Burkhard Rost; Christine A. Orengo (Bioinform., 2023)

InterPro in 2022. - Typhaine Paysan-Lafosse; Matthias Blum; Sara Chuguransky; Tiago Grego; Beatriz Lázaro Pinto; Gustavo A. Salazar; Maxwell L. Bileschi; Peer Bork; Alan J. Bridge; Lucy J. Colwell; Julian Gough; Daniel H. Haft; et al. (Nucleic Acids Res., 2023)