Using a 3D virtual muscle model to link gene expression changes during myogenesis to protein spatial location in muscle. - Ashley J. Waardenberg; Antonio Reverter; Christine A. Wells; Brian P. Dalrymple (BMC Syst. Biol., 2008)

Identifying Co-Regulating microRNA Groups. - Jiyuan An; Kwok Pui Choi; Christine A. Wells; Yi-Ping Phoebe Chen (J. Bioinform. Comput. Biol., 2010)

Defining an informativeness metric for clustering gene expression data. - Jessica Cara Mar; Christine A. Wells; John Quackenbush (Bioinform., 2011)

A promoter-level mammalian expression atlas. - Fantom Consortium; RIKEN PMII; RIKEN CLST (DGT); Alistair R. R. Forrest; Hideya Kawaji; Michael Rehli; J. Kenneth Baillie; Michiel J. L. de Hoon; Vanja Haberle; Timo Lassmann; Ivan V. Kulakovskiy; Marina Lizio; et al. (Nat., 2014)

Ontology Challenges for the Stem Cell Community: Towards Integrative Data Mining in the Stemformatics Atlas. - Chris Pacheco Rivera; Rowland Mosbergen; Othmar Korn; Tyrone Chen; Isha Nagpal; Christine A. Wells (ICBO, 2017)

Shared activity patterns arising at genetic susceptibility loci reveal underlying genomic and cellular architecture of human disease. - J. Kenneth Baillie; Andrew Bretherick; Christopher S. Haley; Sara Clohisey; Alan Gray; Lucile P. A. Neyton; Jeffrey Barrett; Eli A. Stahl; Albert Tenesa; Robin Andersson; J. Ben Brown; Geoffrey J. Faulkner; et al. (PLoS Comput. Biol., 2018)

Stemformatics: visualize and download curated stem cell data. - Jarny Choi; Chris M. Pacheco; Rowland Mosbergen; Othmar Korn; Tyrone Chen; Isha Nagpal; Steve Englart; Paul W. Angel; Christine A. Wells (Nucleic Acids Res., 2019)

A simple, scalable approach to building a cross-platform transcriptome atlas. - Paul W. Angel; Nadia Rajab; Yidi Deng; Chris M. Pacheco; Tyrone Chen; Kim-Anh Lê Cao; Jarny Choi; Christine A. Wells (PLoS Comput. Biol., 2020)

Ten simple rules for navigating the computational aspect of an interdisciplinary PhD. - Sabrina Islam; Christine A. Wells (PLoS Comput. Biol., 2021)