Regularized partial least squares with an application to NMR spectroscopy. - Genevera I. Allen; Christine B. Peterson; Marina Vannucci; Mirjana Maletic-Savatic (Stat. Anal. Data Min., 2013)

TreeQTL: hierarchical error control for eQTL findings. - Christine B. Peterson; M. Bogomolov; Yoav Benjamini; Chiara Sabatti (Bioinform., 2016)

NExUS: Bayesian simultaneous network estimation across unequal sample sizes. - Priyam Das; Christine B. Peterson; Kim-Anh Do; Rehan Akbani; Veerabhadran Baladandayuthapani (Bioinform., 2020)

aPCoA: covariate adjusted principal coordinates analysis. - Yushu Shi; Liangliang Zhang; Kim-Anh Do; Christine B. Peterson; Robert R. Jenq (Bioinform., 2020)

Compositional zero-inflated network estimation for microbiome data. - Min Jin Ha; Junghi Kim; Jessica Galloway-Pena; Kim-Anh Do; Christine B. Peterson (BMC Bioinform., 2020)

ProgPerm: Progressive permutation for a dynamic representation of the robustness of microbiome discoveries. - Liangliang Zhang; Yushu Shi; Kim-Anh Do; Christine B. Peterson; Robert R. Jenq (BMC Bioinform., 2021)

Estimating the optimal linear combination of predictors using spherically constrained optimization. - Priyam Das; Debsurya De; Raju Maiti; Mona Kamal; Katherine A. Hutcheson; Clifton D. Fuller; Bibhas Chakraborty; Christine B. Peterson (BMC Bioinform., 2022)

Latent Network Estimation and Variable Selection for Compositional Data Via Variational EM. - Nathan Osborne; Christine B. Peterson; Marina Vannucci (J. Comput. Graph. Stat., 2022)

TARO: tree-aggregated factor regression for microbiome data integration. - Aditya K. Mishra; Iqbal Mahmud; Philip L. Lorenzi; Robert R. Jenq; Jennifer A Wargo; Nadim J. Ajami; Christine B. Peterson (Bioinform., 2024)

CAT: a conditional association test for microbiome data using a permutation approach. - Yushu Shi; Liangliang Zhang; Kim-Anh Do; Robert R. Jenq; Christine B. Peterson (Briefings Bioinform., 2025)