Generalized Pattern Matching and the Complexity of Unavoidability Testing. - Christine E. Heitsch (CPM, 2001)

Exact Distribution of Deletion Sizes for Unavoidable Strings. - Christine E. Heitsch (SPIRE, 2001)

From RNA Secondary Structure to Coding Theory: A Combinatorial Approach. - Christine E. Heitsch; Anne Condon; Holger H. Hoos (DNA, 2002)

Insufficiency of four known necessary conditions on string unavoidability. - Christine E. Heitsch (J. Algorithms, 2005)

GTfold: a scalable multicore code for RNA secondary structure prediction. - Amrita Mathuriya; David A. Bader; Christine E. Heitsch; Stephen C. Harvey (SAC, 2009)

The discrepancy of the lex-least de Bruijn sequence. - Joshua N. Cooper; Christine E. Heitsch (Discret. Math., 2010)

Large-Scale Network Analysis. - David A. Bader; Christine E. Heitsch; Kamesh Madduri (Graph Algorithms in the Language of Linear Algebra, 2011)

Generalized Fibonacci recurrences and the lex-least de Bruijn sequence. - Joshua N. Cooper; Christine E. Heitsch (Adv. Appl. Math., 2013)

Combinatorial Insights into RNA Secondary Structure. - Christine E. Heitsch; Svetlana Poznanovic (Discrete and Topological Models in Molecular Biology, 2014)

On the Structure of RNA Branching Polytopes. - Fidel Barrera-Cruz; Christine E. Heitsch; Svetlana Poznanovic (SIAM J. Appl. Algebra Geom., 2018)

RNAStructViz: graphical base pairing analysis. - Maxie Dion Schmidt; Anna Kirkpatrick; Christine E. Heitsch (Bioinform., 2021)