Enhanced pClustering and Its Applications to Gene Expression Data. - Sungroh Yoon; Christine Nardini; Luca Benini; Giovanni De Micheli (BIBE, 2004)

Discovering Coherent Biclusters from Gene Expression Data Using Zero-Suppressed Binary Decision Diagrams. - Sungroh Yoon; Christine Nardini; Luca Benini; Giovanni De Micheli (IEEE ACM Trans. Comput. Biol. Bioinform., 2005)

Mining Gene Sets for Measuring Similarities. - Christine Nardini; Daniele Masotti; Sungroh Yoon; Enrico Macii; Michael D. Kuo; Giovanni De Micheli; Luca Benini (ISCC, 2006)

TOM: a web-based integrated approach for identification of candidate disease genes. - Simona Rossi; Daniele Masotti; Christine Nardini; Elena Bonora; Giovanni Romeo; Enrico Macii; Luca Benini; Stefano Volinia (Nucleic Acids Res., 2006)

Statistical-computational techniques for extraction of functional genomic units from microarray experiments. - Christine Nardini (2006)

Statistical Significance in Omic Data Analyses - Alternative/Complementary Method for Efficient Automatic Identification of Statistically Significant Tests in High Throughput Biological Studies. - Christine Nardini; Luca Benini; Michael D. Kuo (BIOSIGNALS (1), 2008)

MM-Correction: Meta-analysis-Based Multiple Hypotheses Correction in Omic Studies. - Christine Nardini; Lei Wang; Hesen Peng; Luca Benini; Michael D. Kuo (BIOSTEC (Selected Papers), 2008)

TOM: enhancement and extension of a tool suite for in silico approaches to multigenic hereditary disorders. - Daniele Masotti; Christine Nardini; Simona Rossi; Elena Bonora; Giovanni Romeo; Stefano Volinia; Luca Benini (Bioinform., 2008)

High parallelism, portability, and broad accessibility: Technologies for genomics. - Carlotta Guiducci; Christine Nardini (ACM J. Emerg. Technol. Comput. Syst., 2008)

Mania: a Gene Network Reverse Algorithm for Compounds Mode-of-Action and genes Interactions Inference. - Darong Lai; Hongtao Lu; Mario Lauria; Diego di Bernardo; Christine Nardini (Adv. Complex Syst., 2010)

Inference of gene networks - application to Bifidobacterium. - Darong Lai; Xinyi Yang; Gang Wu; Yuanhua Liu; Christine Nardini (Bioinform., 2011)

Joint Analysis of Transcriptional and post- Transcriptional Data: Searching Emergent Properties in Brain Tumor Samples. - Raffaele Fronza; Michele Tramonti; William R. Atchley; Christine Nardini (BMC Bioinform., 2011)

An S-System Parameter Estimation Method (SPEM) for Biological Networks. - Xinyi Yang; Jennifer E. Dent; Christine Nardini (J. Comput. Biol., 2012)

Brain cancer prognosis: independent validation of a clinical bioinformatics approach. - Raffaele Fronza; Michele Tramonti; William R. Atchley; Christine Nardini (J. Clin. Bioinform., 2012)

SPNConverter: a new link between static and dynamic complex network analysis. - Jennifer E. Dent; Xinyi Yang; Christine Nardini (Bioinform., 2013)

MIMO: an efficient tool for molecular interaction maps overlap. - Pietro Di Lena; Gang Wu; Pier Luigi Martelli; Rita Casadio; Christine Nardini (BMC Bioinform., 2013)

From desk to bed: Computational simulations provide indication for rheumatoid arthritis clinical trials. - Jennifer E. Dent; Christine Nardini (BMC Syst. Biol., 2013)

Multilevel omic data integration in cancer cell lines: advanced annotation and emergent properties. - Yuanhua Liu; Valentina Devescovi; Suning Chen; Christine Nardini (BMC Syst. Biol., 2013)

Mechanotransduction map: simulation model, molecular pathway, gene set. - Jennifer E. Dent; Valentina Devescovi; Han Li; Pietro Di Lena; Youtao Lu; Yuanhua Liu; Christine Nardini (Bioinform., 2015)

A method for automated pathogenic content estimation with application to rheumatoid arthritis. - Xiaoyuan Zhou; Christine Nardini (BMC Syst. Biol., 2016)

Systemic evaluation of cellular reprogramming processes exploiting a novel R-tool: eegc. - Xiaoyuan Zhou; Guofeng Meng; Christine Nardini; Hongkang Mei (Bioinform., 2017)

Missing value estimation methods for DNA methylation data. - Pietro Di Lena; Claudia Sala; Andrea Prodi; Christine Nardini (Bioinform., 2019)

Methylation data imputation performances under different representations and missingness patterns. - Pietro Di Lena; Claudia Sala; Andrea Prodi; Christine Nardini (BMC Bioinform., 2020)

Attention Based Subgraph Classification for Link Prediction by Network Re-weighting. - Darong Lai; Zheyi Liu; Junyao Huang; Zhihong Chong; Weiwei Wu 001; Christine Nardini (CIKM, 2021)

Task-oriented attributed network embedding by multi-view features. - Darong Lai; Sheng Wang; Zhihong Chong; Weiwei Wu 001; Christine Nardini (Knowl. Based Syst., 2021)

Estimage: a webserver hub for the computation of methylation age. - Pietro Di Lena; Claudia Sala; Christine Nardini (Nucleic Acids Res., 2021)

Evaluation of different computational methods for DNA methylation-based biological age. - Pietro Di Lena; Claudia Sala; Christine Nardini (Briefings Bioinform., 2022)

Editorial: Computational Methods for Analysis of DNA Methylation Data. - Pietro Di Lena; Christine Nardini; Matteo Pellegrini (Frontiers Bioinform., 2022)

Explainable Drug Repurposing Approach From Biased Random Walks. - Filippo Castiglione; Christine Nardini; Elia Onofri; Marco Pedicini; Paolo Tieri (IEEE ACM Trans. Comput. Biol. Bioinform., 2023)

Editorial: Computational methods for analysis of DNA methylation data, volume II. - Pietro Di Lena; Christine Nardini; Matteo Pellegrini (Frontiers Bioinform., 2024)

Where are we in the implementation of tissue-specific epigenetic clocks? - Claudia Sala; Pietro Di Lena; Danielle Fernandes Durso; Ìtalo Faria do Valle; Maria Giulia Bacalini; Daniele Dall'Olio; Claudio Franceschi; Gastone C. Castellani; Paolo Garagnani; Christine Nardini (Frontiers Bioinform., 2024)

Mimicking cancer therapy in an agent-based model: The case of hepatoblastoma. - Alessandro Ravoni; Enrico Mastrostefano; Roland Kappler; Carolina Armengol; Filippo Castiglione; Christine Nardini (Comput. Methods Programs Biomed., 2025)